Query= MSMg01no378_d04.b1 MSMg01no378_d04.b1 CHROMAT_FILE:
MSMg01no378_d04.b1 PHD_FILE: MSMg01no378_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:38 2005
(378 letters)
>mm_chr11_86259055_86259833
Length = 779
Score = 696 bits (360), Expect = 0.0
Identities = 372/376 (98%), Gaps = 1/376 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaatttttt-cccctcctgtgcctgtgtgtgagttggggatgaatgtgcatgca 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatttttttcccctcctgtgcctgtgtgtgagttggggatgaatgtgcatgca 263
Query: 63 tgtgtgtttgaacatgtgagtacatgtgtgtgcacagattacacactgtgtgtgtgtgtg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgtgtttgaacatgtgagtacatgtgtgtgcacagattacacactgtgtgtgtgtgtg 323
Query: 123 tgtctgtgtgtgtgtgcaagtctgaggttaacattggcatctttctccatcttattcatt 182
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtctgtgtgtgtgtgcaggtctgaggttaacattggcatctttctccatcttattcatt 383
Query: 183 gtgagtgggtctctcagttgaacccaggactcaatgacatggctagtcctgctagccagc 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaagtgggtctctcagttgaacccaggactcaatgacatggctagtcctgctagccagc 443
Query: 243 ttgctttggagctcccatgtctgccttcagagtgcaggaattacagctaggctgccatac 302
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgctttggagctcccgtgtctgccttcagagtgcaggaattacagctaggctgccatac 503
Query: 303 cacccagtatttatgtggtttctggacatccaaactccagtgtcacacttacacagcaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacccagtatttatgtggtttctggacatccaaactccagtgtcacacttacacagcaag 563
Query: 363 tgtggtacccactagg 378
||||||||||||||||
Sbjct: 564 tgtggtacccactagg 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 779
Length adjustment: 9
Effective length of query: 369
Effective length of database: 770
Effective search space: 284130
Effective search space used: 284130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_d04.g1 MSMg01no378_d04.g1 CHROMAT_FILE:
MSMg01no378_d04.g1 PHD_FILE: MSMg01no378_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:38 2005
(462 letters)
>mm_chr11_86438043_86438901
Length = 859
Score = 870 bits (450), Expect = 0.0
Identities = 458/462 (99%), Gaps = 3/462 (0%)
Strand = Plus / Minus
Query: 1 tctttaagctagcagtatttaaattaatcaacatttgtactttatatattaaaactaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tctttaagctagcagtatttaaattaatcaacatttgtactttatatattaaaactaaat 600
Query: 61 gctcatactaagcatatataaatttaaggctaaacagattttacctagtaagatttttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gctcatactaagcatatataaatttaaggctaaacagattttacctagtaagatttttat 540
Query: 121 tctttcagaaatttcaatttatttgcattagtggggggggggggacaaaaaccaatctta 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 539 tctttcagaaatttcaatttatttgcattagt---gggggggggacaaaaaccaatctta 483
Query: 181 aaaccaaagcttatcatttgttttgacaaactctcatgacctgtgccttttcattttaga 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaaccaaaacttatcatttgttttgacaaactctcatgacctgtgccttttcattttaga 423
Query: 241 caatgaaagacatttttcctttcaaagaacaaggtataaatgaaggattcttttgacctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caatgaaagacatttttcctttcaaagaacaaggtataaatgaaggattcttttgacctt 363
Query: 301 tgttgataatgatagaacatttgtttcatcatttgagtttggcgattatgggaaagcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgttgataatgatagaacatttgtttcatcatttgagtttggcgattatgggaaagcatt 303
Query: 361 tgataatggtcacttagacactcaaccaaagtgcttcagcattccatttatgttctgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgataatggtcacttagacactcaaccaaagtgcttcagcattccatttatgttctgttt 243
Query: 421 gttgagcacattttcctgtgagtgttagcagttggatatgcc 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttgagcacattttcctgtgagtgttagcagttggatatgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 859
Length adjustment: 10
Effective length of query: 452
Effective length of database: 849
Effective search space: 383748
Effective search space used: 383748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
