BAC Information

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BAC

Clone NameMSMg01-378G04
Chromosome11 (Build37)
Map Location 40,976,186 - 40,976,518
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
Downstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2, Gabra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378G04.T7 (MSMg01no378_g04.b1)MSMg01-378G04.TJ (MSMg01no378_g04.g1)
ACCAG483244AG483245
length763749
length of high quality
(start - end)
345 (51 - 395)495 (79 - 573)
definitionCHROMAT_FILE: MSMg01no378_g04.b1 PHD_FILE: MSMg01no378_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:52 2005CHROMAT_FILE: MSMg01no378_g04.g1 PHD_FILE: MSMg01no378_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGATTTCTGATTTACATTCTGATTTGGAAAATTGAATTAA
TTCAAAATTCTTATCCTTTATATTTAAAATGCATCATAAATTAAAACTAG
CCTGATTTTATATTTTATGTATAAGTAAATATCTTATACTAATTTATACA
TCCTACTTGTTTGGTATCTGAGGATTTAAAAAAAAGTACTTTAGAGTGTC
CGTTCATGGACGATCAGGGGTGTATGTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTTTAGGAAAGTCAACCTTGAACCTTGAATATTGTTCCTCAGGTGCC
ATATACATTGTCTCATGATACAGTCTCCCTCACTTGGAACTTGCCAAGCA
TGTTACTGCTTCTGCTTGTCTCTACATCTCCTGAGCTAGGCTGACAATTA
AATACTACCATGTCCTCATTTCAATCAAAATTTTAATGAATATCTGCCTC
ACTGTCCTTATTCTTACCTTCTGTATAATCTTATTCTTATCTTTTATTTA
CCCTATTCCCAGATGTTAATTACTTCCTACTCTTTCTCACGTTCTGAAAT
TTTCTTCTAAACCCTCTTCTATCTACTTTCCCCGCTTTCCCTGTCTACCC
CCCTCAGTTTTCATTTTTATTTTAACTTCTTCTGTTTATTCTCTCTATTA
CTATATTCGCTCT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCAT
TTTTAATAAAGTTATTTGGTTCTCTGGAGTCTGACTTCCTGAGTTCTTTG
GCGATATTGGATATTAGCCCACTATTGGATATAGGATTGGTAAAGATCTT
TTCCCAATTTATTGGTTGCTGTTTTGTCCTGTTGACAGTGTCCTTTGCTT
TAAAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTTGATCTT
ACAGCACAAACCATTGGTGTTCTGTTCTGGAATTTTTCTCCTGTGCCTAT
ATGTTTGAGGTTCTTCCCCACTTTGTCTCTATAAGTTTCAGTGTATCTGG
TTTTATATGGGGGCCCTTGATCCACTTGGACTTAAGCTTTGTACAAGAAT
GGGTCAGTTTGCCTTCTTCTACATGCTAACTGCCAGTTAAGCCTGCACCA
TTATTTGAAAATGCTGTATTTTTTCCATTGAATGATTTTAGGTCCTTTGT
CGAAGATCAAGTGACCATAGGTGTGTGGGTCCATTTCTGAGTCTTCAATT
CTATTCCATTGATATCCCTGGCTCTCACTGCACTACTTCGATCATGCCGC
TTCTTGTCTCAATTTGCTCTGTAGTAACGCTTTGTATCCTGCCATGTTTT
TTTCCCTCTCATGTCTTTCTTTTTGTTTCCACTTTTTCCTGCATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_g04.b1 MSMg01no378_g04.b1 CHROMAT_FILE:
MSMg01no378_g04.b1 PHD_FILE: MSMg01no378_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:52 2005
         (345 letters)



>mm_chr11_40975982_40976725
          Length = 744

 Score =  480 bits (248), Expect = e-140
 Identities = 297/334 (88%), Gaps = 34/334 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgatttctgatttacattctgatttggaaaattgaattaattcaaaattcttat 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgatttctgatttacattcagatttggaaaattgaattaattcaaaattcttat 264

                                                                       
Query: 65  cctttatatttaaaatgcatcataaattaaaactagcctgattttatattttatgtataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctttatatttaaaatgcatcataaattaaaactagcctgattttatattttatgtataa 324

                                                                       
Query: 125 gtaaatatcttatactaatttatacatcctacttgtttggtatctgaggatttaaaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaaatatcttatactaatttatacatcctacttgtttggtatctgaggatttaaaaaaa 384

                                                                       
Query: 185 agtactttagagtgt-----------ccgttcatggacgatcaggggtgtatgtctctct 233
            ||||||||||||||           ||||||||||||||||||||||||||||||||||
Sbjct: 385 -gtactttagagtgtatgtccagtgtccgttcatggacgatcaggggtgtatgtctctct 443

                                                                       
Query: 234 ctctctctctctctctctctctct----------------------gtgtgtgtgtgtgt 271
           ||||||||||||||||||||||||                      |||||||||| |||
Sbjct: 444 ctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtatgt 503

                                             
Query: 272 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 305
           |||||||||||||||||||||||||||| |||||
Sbjct: 504 gtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgt 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 744
Length adjustment: 9
Effective length of query: 336
Effective length of database: 735
Effective search space:   246960
Effective search space used:   246960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)