Query= MSMg01no378_h19.b1 MSMg01no378_h19.b1 CHROMAT_FILE:
MSMg01no378_h19.b1 PHD_FILE: MSMg01no378_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:59 2005
(191 letters)
>mm_chr11_5228747_5229342
Length = 596
Score = 340 bits (176), Expect = 2e-98
Identities = 186/192 (96%), Gaps = 5/192 (2%)
Strand = Plus / Minus
Query: 5 gaattctgcaagtctccttctgtaaagagttgtgacgaactggcaagatagtttagttaa 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 396 gaattctgcaagtctccttctgtaaagagttgtgacggactggcaagatagtttagttaa 337
Query: 65 ctgcacaagtctgatagcctaagtttgctcttctaagcccacagta-----agagaacta 119
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 336 ctgcacaagtctgatagcctaagtttgctcttctaagcccacagtaagaggagagaacta 277
Query: 120 actaaaagttatccttccagcctccactctcacatacatgtatatttacacgtaacacat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 actaaaagttatccttccagcctccactctcacatacatgtatatttacacgtaacacat 217
Query: 180 gtgtgtgtgcca 191
||||||||||||
Sbjct: 216 gtgtgtgtgcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 596
Length adjustment: 8
Effective length of query: 183
Effective length of database: 588
Effective search space: 107604
Effective search space used: 107604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no378_h19.g1 MSMg01no378_h19.g1 CHROMAT_FILE:
MSMg01no378_h19.g1 PHD_FILE: MSMg01no378_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:59 2005
(489 letters)
>mm_chr11_5066500_5067388
Length = 889
Score = 915 bits (473), Expect = 0.0
Identities = 485/489 (99%)
Strand = Plus / Plus
Query: 1 caggaaaaccactctatagaaggagtgggaagagcagccacctggctcctggcctgggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaaaaccactctatagaaggagtgggaagagcagccacctggctcctggcctgggag 260
Query: 61 ccacctgggctggtgggcacaggcctggcctcactggggtaaagcagctgtgtgcaccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacctgggctggtgggcacaggcctggcctcactggggtaaagcagctgtgtgcaccag 320
Query: 121 agctgggcatttaaacccaggtgacaaagcacaggtgctgctaaaatgctagaatcttcc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgggcatttaaacccaggcgacaaagcacaggtgctgctaaaatgctagaatcttcc 380
Query: 181 aagctaacctcgaggtagcccagccggcattggatgagggctctggagaccctgtcaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctaacctcgaggtagcccagccggcattggatgagggctctggagaccctgtcaatg 440
Query: 241 cagacaggacggaagctccaagagagcccctacatttccagatagatcccacgaggggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cagacaggacggaagctccaagagagcccctacatttccagatagatcccatgaggggag 500
Query: 301 ctgatgttggagaggccagagcctgttcaccatgggcaacagaatgcagccacaccgggt 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgatgctggagaggccagagcctgttcaccatgggcaacagaatgcagccacaccgggt 560
Query: 361 ccagcccctgggtggcttcacaaaaacccaagcctgttccctctggtcttccaacttccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ccagcccctgggtggcttcacaaaaacccaagcctgttccctctggtcttccaactttcc 620
Query: 421 agatgcagtggctccaaaggccatctttggggctcactcttctacatagtgacggtcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatgcagtggctccaaaggccatctttggggctcactcttctacatagtgacggtcact 680
Query: 481 atcagggag 489
|||||||||
Sbjct: 681 atcagggag 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
