BAC Information

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BAC

Clone NameMSMg01-378I17
Chromosome11 (Build37)
Map Location 25,033,341 - 25,033,683
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl11a, LOC100042282
Downstream gene5730522E02Rik, LOC100042328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378I17.T7 (MSMg01no378_i17.b1)MSMg01-378I17.TJ (MSMg01no378_i17.g1)
ACCAG483366AG483367
length753771
length of high quality
(start - end)		492 (51 - 542)466 (80 - 545)
definitionCHROMAT_FILE: MSMg01no378_i17.b1 PHD_FILE: MSMg01no378_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:03 2005CHROMAT_FILE: MSMg01no378_i17.g1 PHD_FILE: MSMg01no378_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGGAGAGAAAAATACTATTTTGTATTTGTTATTTTTGTT
ATATTTTATAAAAATTGTATGCTTTTTTCTATTAAAAAAATGAATAGTAA
TGGCCGTACTAGAGACACAGTTATAGAGTTTAGCCTGCTCTTTCAGAGGA
TCTAGGCTCAGTTCCTAGTACACTGGCAGGCCACAATTACCCTTAACTCC
AACTTTGAGAGATCCAACAAACACCCTGTCTTCTGGCCTCCATAGGCACT
TGCATGCCCATGACTTACACACACACACACACACACACACACACAAAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT
TAAAATTTTGTAAAATTAACAGGGTAGGCATATAGGAGAAATGACAGTAT
ATGGGTAGTCATGGTGGTAGCTTCCACAACAGAAAACTGCACCTGCATGC
CAACCATTGTACAGGGTGTGTTCCACTCATCATGAATCTCAAAGATTAAA
TGTGACACCTCATGAGTGGTGATTATAAATTGTTTATTTTCTCCTTACTA
TTGGGTTCCATCTTTTACATAAAATCTGACTAAAGTCCAGGAAACTGGCC
CAAATGTGATTTTTGTAAAAGAAAAAAGCCCCTTTCTGGAAAGGGGAATG
GAAAGACCCCTTTTTTGAAAAATGTTTCCCGTTTGGAGCGTAAATTTGGA
GAA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAAGCAAATAG
TTGGAACTAGTAAATATCATCCTGAGTGAGGTAACTCAGTCACAAAAGAA
CACAGATGGTATGTACTCACTGATAAGTGGATATAAGCCCAGAAACTGGG
AATACCCAAGATATAATTCACAGACCACATGAAGCTCAAGAAGAAAATAG
ACCAAAGTGTGGATAGTTCAGTCCTTCTTAGAAGGGAGAACAAGAGACTG
AAGGAAAGGCCATCCAGAGCCTGCTCTACCTGCAGATCCATCCCATATAT
AGTCACCAAACCCAGACACTCTTACTGATGCCAACAAGTGCTTGCTGACA
GGAGCCTGATACAGCTGTCTCCTGAGATGCTCTAACAGATCCTGACCAAT
ACAGATGTGGATGCTCACAGCCTACCATTGGACTGAGCATGGGGACCCCA
ATGGGGAAGTTAAGGAAAGGACTGAAGGAGGTGAAGGGGCTTTATCTGGG
GTCAATGGGAGGGGAGTCCCTTGGTCCTGTGGGAGCTCAATGCTCCAGTG
TAATGAAATGTTAAGGCAGTGAGGCAGGAATGGGTAAATTGTGGGGGAAA
ACAACCCTCAAAACATGGTAAGGAAAAAGAAAAAGGGTTTTTAATAAGCT
AAACCCGACCGAGCGACTCCCCCTAATTTTTTACCAAATTTCCCTCTTGA
CTAACCGGTCTGTGTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_i17.b1 MSMg01no378_i17.b1 CHROMAT_FILE:
MSMg01no378_i17.b1 PHD_FILE: MSMg01no378_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:03 2005
         (492 letters)



>mm_chr11_25032792_25033683
          Length = 892

 Score =  601 bits (311), Expect = e-176
 Identities = 332/343 (96%), Gaps = 8/343 (2%)
 Strand = Plus / Minus

                                                                       
Query: 158 tcagttcctagtacactggcaggccacaattacccttaactccaactttgagagatccaa 217
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 892 tcagttcctagtacactggcaggccacaattgcccttaactccaactttgagagatccaa 833

                                                                       
Query: 218 caaacaccctgtcttctggcctccataggcacttgcatgcccatgacttacacacacaca 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 caaacaccctgtcttctggcctccataggcacttgcatgcccatgacttacacacacaca 773

                                                                       
Query: 278 cacacacacacacacaca-------a-agagagagagagagagagagagagagagagaga 329
           ||||||||||||||||||       | | | |||||||||||||||||||||||||||||
Sbjct: 772 cacacacacacacacacacacacacacacacagagagagagagagagagagagagagaga 713

                                                                       
Query: 330 gagagagagagagagagagattaaaattttgtaaaattaacagggtaggcatataggaga 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gagagagagagagagagagattaaaattttgtaaaattaacagggtaggcatataggaga 653

                                                                       
Query: 390 aatgacagtatatgggtagtcatggtggtagcttccacaacagaaaactgcacctgcatg 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aatgacagtatatgggtagtcatggtggtagcttccacaacagaaaactgcacctgcatg 593

                                                      
Query: 450 ccaaccattgtacagggtgtgttccactcatcatgaatctcaa 492
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ccaaccattgtacagggtgtgttccactcatcatgaatctcaa 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 28
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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