NNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGTCCTGACTTCCATTGCTGACGAACTAGCATGTAGA
AGCTTAAGCTGAACAAACCCTTTCCTTCCAAAGTTACTTTGGAGATGGTG
TTTTGCTGCAGCAATAGAAACCCAAATTAACAGTCAGAATGGCTAAGATA
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGTGGAAC
ACTCCTCTATTGCTAGTGGAATTGCAAGCTTGTACAACCACTCTGGAGAT
CAGTCTGGCAGTTCCTCAGAAAATTGGACACAGTGCTACCTGAAGATCCA
GAAATACCTCTCCTGGGCATAGACCCAGAAGATGTTCCAACTGGTAATAA
GGATACATGCTCCACTATGTTCATAGCAGCCTTATTTATATTAGCCAGAA
GGTGAAAAGAACCCAGATGTCCCTCAACATAGAAATGGATACAGAAAATG
TGAATGGTACATTTACACAATGGAGTACTACTCAACTATTAAAAACAATG
AATTTATAAAATGCTTGGGGAAATGGATGGATCTGGAGGATATCATCCTG
AGTGAAGTAACCCAATCACATAAGTAGTCACTTGATATACACTCACTGAT
AAGTGGATATTATCCCAGAAACTTAAAATACCCCAGTACCATTTTGCNAA
CCCCAGAAAATCATGAAGGAGAACCCCGTGTGGATACCTATTCC

NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTAAACTGGAATAAAAA
ATGAAAAATACTTTCTACCACAAAATATTTTACTGGCTCTCAAATTCTTG
CTCTTCAGAGGTGATGACTCTCATTTGTGATACTCACTGTAATAGCATGT
AAATCATTGTCTTCAATATGATTTCCTCTTATCAGAGATATCAGTAATAT
TTAAGTCCAGGAAACAGCAGAATCCCTTTGAGCTTTTGTTAAACTTAGAC
CATTTTCTATATCTACTTCCAGACTGGACACTGAAGATTTACCATTTTGT
AACATTCAGTTGCGACTCTCAGGAAAAGCAGACAATCAAGCATGGACAAG
TGGTAGTAGTCTTTCATTCACATATATTTTAAGATTTCTTAAGTGGCTTA
ATATACTGAATGCATATAGAACTGAAATTAAATTGTGGGTCTTGCGTAGG
ATTAGAATAATTCTATACCTTTCAGGAAATTCTTATTTAAATTATGGCCA
AGCTCATCACACATTTAAAATAAATCATTTATACAAAGCTTTGGGACACA
ATTTCACTGTATTAATTCCTAGAACAGCATGCCTGATGAAGTATCAAAAA
TTCTCATCCCATCACTGAAAACAACACTGTGCAAAGGAAAGTTATTTGGA
AAACTATCTAAAAAGAATCCCACCTCAGCAGTGGATATTATGCCN

Query= MSMg01no378_k16.g1 MSMg01no378_k16.g1 CHROMAT_FILE:
MSMg01no378_k16.g1 PHD_FILE: MSMg01no378_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:12 2005
         (495 letters)



>mm_chr11_39120924_39121818
          Length = 895

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttaaactggaataaaaaatgaaaaatactttctaccacaaaatattttactggctctc 60
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 695 acttaaactggaataaaaaacgaaaaatactttctacaacaaaatattttactggctctc 636

                                                                       
Query: 61  aaattcttgctcttcagaggtgatgactctcatttgtgatactcactgtaatagcatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaattcttgctcttcagaggtgatgactctcatttgtgatactcactgtaatagcatgta 576

                                                                       
Query: 121 aatcattgtcttcaatatgatttcctcttatcagagatatcagtaatatttaagtccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aatcattgtcttcaatatgatttcctcttatcagagatatcagtaatatttaagtccagg 516

                                                                       
Query: 181 aaacagcagaatccctttgagcttttgttaaacttagaccattttctatatctacttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaacagcagaatccctttgagcttttgttaaacttagaccattttctatatctacttcca 456

                                                                       
Query: 241 gactggacactgaagatttaccattttgtaacattcagttgcgactctcaggaaaagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 455 gactggacactgaagatttaccattttgtaacattcagttgcgactctcgggaaaagcag 396

                                                                       
Query: 301 acaatcaagcatggacaagtggtagtagtctttcattcacatatattttaagatttctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 acaatcaagcatggacaagtggtagtagtctttcattcacatatattttaagatttctta 336

                                                                       
Query: 361 agtggcttaatatactgaatgcatatagaactgaaattaaattgtgggtcttgcgtagga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 335 agtggcttaatatactgaatgcatatagaactgaaattaaattgtgggtcttgcatagga 276

                                                                       
Query: 421 ttagaataattctatacctttcaggaaattcttatttaaattatggccaagctcatcaca 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttagaataattctataccttttaggaaattcttatttaaattatggccaagctcatcaca 216

                          
Query: 481 catttaaaataaatc 495
           |||||||||||||||
Sbjct: 215 catttaaaataaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)