Query= MSMg01no378_m09.b1 MSMg01no378_m09.b1 CHROMAT_FILE:
MSMg01no378_m09.b1 PHD_FILE: MSMg01no378_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:20 2005
(249 letters)
>mm_chr11_3274957_3275605
Length = 649
Score = 449 bits (232), Expect = e-131
Identities = 244/248 (98%)
Strand = Plus / Minus
Query: 1 tgcctgggtactgggattaaagtcctgtgctagcacacctgcttatggacgtgtcttcgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 572 tgcctgggtactgggattaaagtcctgtgctagcacacctgcttatggacacgtcttcgt 513
Query: 61 aattgagggtccctgctctgataattttagcttgtgttaagttgacataaaaccatcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aattgagggtccctgctctgataattttagcttgtgttaagttgacataaaaccatcacg 453
Query: 121 gcactctccaagcgttctgggcacttccaaagtctagagtgagctggggaggggaggggc 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gcactctccaagtattctgggcacttccaaagtctagagtgagctggggaggggaggggc 393
Query: 181 agggaccagagaggtagcctgttggaggaatggccttgctaagcagcaaggagacgcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agggaccagagaggtagcctgttggaggaatggccttgctaagcagcaaggagacgcagg 333
Query: 241 tctccaga 248
||||||||
Sbjct: 332 tctccaga 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no378_m09.g1 MSMg01no378_m09.g1 CHROMAT_FILE:
MSMg01no378_m09.g1 PHD_FILE: MSMg01no378_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:20 2005
(512 letters)
>mm_chr11_3124578_3125489
Length = 912
Score = 959 bits (496), Expect = 0.0
Identities = 508/512 (99%)
Strand = Plus / Plus
Query: 1 tttaaccttgataaggtgccatgcttggcttcggtgagtgtaacaacacatttgcaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaccttgataaggtgccatgcttggcttcggtgagtgtaacaacacatttgcaaaca 260
Query: 61 tggatggaggggttagaggatgactcagtacataaaagccttgctgtgcaagtacgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatggaggggttagaggatgactcagtacataaaagccttgctgtgcaagtacgaaga 320
Query: 121 ctgaatgaaatgtagatctctagaactcaagtaaatgttggggcagcatggtggtcctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaatgaaatgtagatctctagaactcaagtaaatgttggggcagcatggtggtcctcc 380
Query: 181 tggaatcccagctcccggaacaagtgaggtaactgaactagctctgttggtgagctgtcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaatcccagctcccggaacaagtgaggtaactgaactagctctgttggtgagctgtcg 440
Query: 241 gctcttatgagaggccctggctcaggttataaaggacagagtgaataaaaaatgcctacc 300
|||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gctcaaatgagaggccctgactcaggttataaaggagagagtgaataaaaaatgcctacc 500
Query: 301 atcagcctcttgacctctgcttacacacagcatatgcacccaaacacatgtgtgtgtacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagcctcttgacctctgcttacacacagcatatgcacccaaacacatgtgtgtgtacc 560
Query: 361 cccacacagcaatgtccgtatatacctgccacacactacatgcatgcatactcatatgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccacacagcaatgtccgtatatacctgccacacactacatgcatgcatactcatatgta 620
Query: 421 caaaataaaaataaacctgtacagaatctggatgtggaggtatgcacttataatcttagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaataaaaataaacctgtacagaatctggatgtggaggtatgcacttataatcttagc 680
Query: 481 acttgggatgccaagacgagaggagtttgagt 512
||||||||||||||||||||||||||||||||
Sbjct: 681 acttgggatgccaagacgagaggagtttgagt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
