BAC Information

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BAC

Clone NameMSMg01-378P22
Chromosome11 (Build37)
Map Location 101,832,484 - 101,832,947
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost
Downstream geneDusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378P22.T7 (MSMg01no378_p22.b1)MSMg01-378P22.TJ (MSMg01no378_p22.g1)
ACCAG483712AG483713
length785873
length of high quality
(start - end)		468 (48 - 515)---
definitionCHROMAT_FILE: MSMg01no378_p22.b1 PHD_FILE: MSMg01no378_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:37 2005CHROMAT_FILE: MSMg01no378_p22.g1 PHD_FILE: MSMg01no378_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACTTGGTCTTTAGCACACCCGCCACCCCCAAGTGGGTGTGG
ATAATGCCATGGCCAGCAGGGGGCACTGTTGAGGCGGGTGCCTTTCCACC
TTAAGTTGCTCATAGTATTTAAGATGCTAAATGTTTTAATCAAGAGAAGC
ACTGATCTTATAATACGAGGATAAGAGATTTTCTCACAGGAAATTGTCTT
TTTCATAATTCTTTTACAGGCTTTGTCCTGATCGTAGCATAGAGAGAATA
GCTGGATATTTAACTTGTATTCCATTTTCCTCTGCCAGCGTTAGGTTAAC
TCCGTAAAAAGTGATTCAGTGGACCGAAGAGGCTCAGAGGGCAGGGGATG
GTGGGGTGAGGCAGAGCACTGTCACCTGCCAGGCATGGGAGGTCCTGGCA
TCCGGGAGGAAAAGGAAAGTTTAGCCTCTAGTCTACCACCAGTGTTAACG
CACTCTAAAGTTGTAACCAAAATAAATGTCTTACATTACAAAGACGTCTG
TTTTGTGTTTCCTTTTGTGNGGTTGGGCTTTTTATGTGTGCGTTATAACT
GCTGTGGGGGGGCTGTTGTTATTTTTGAGTAAGAACCCTCGGTGGGCTTG
TATTTTTATTCCCTGGCCCTGGCCCATGCCCTTGACTTGCCTTTGCTCCT
GTCTCTTACCTCGGCCTTTCTCTCTTTTTAATATATCAAACACATTTAAA
CCTCCTTTTTTTTCCTTTTCTCCCCTTTTTACCCG

ACGAAGAATAGGGAGGCCCGGNGGNNGNNNGNAAGCGGGACCNGCANNGN
NNNNNNNNNNNNTTGGCGGAAACCGAANNNGNNNNGNNNGNNNNNNNNNG
NNNNNGNNNNNGNNNNNNNTTTTNNCCCAAAAAGAAAGGGGGGAAAGGAG
GAAAGGAGAAAAAAAAATTTATAGGGGAGGGAGGGGAAGNAAGAAGGAGG
AGGGGGGGGGGGGAAGAGAAAGGAAGGAGAAAAAGAAAGAAGGGGAAAGG
AGGGAAAAAAAGAAAATTTTTTTTGGAGAGNAGGAGAGAAAGAAAAGAGA
AAAAAAAAAAGAAGAAAAGAAGGAAAAAAAGAAAAAGGGGGGGTGGGGGA
AAAAAAAAAGGGGGGGGGNNGGGAGGGAGGGTTATTATTCCCCAAACCGC
CCCCCCCAGGAGGGGGGGAAGAAAAGAAAAGTGGAGAGCCACAGCCCCCC
CCCTTAATAAAAAAAAAAAAAAAANCCCGGGGGGGGGGCGCGCCNCCAAC
CCCCACAAGGGCCACACCCGAAGTAAACAAAGCAGCGGACAAAGGAGCGA
AAGAACAGAGACACGCGGGGGAGCAGGAGAGGCGCGGCGCAGCCGCGCGG
AAGGAAAACAAAAGAACCGCCGCCACAGGAAGAAGAANACAATAGCGAGA
CAAAAAAACGCAAACGCCGGGAGAGCAGAAGCGGGCCGAAAACGGAAATA
CACCAGGACAGAGGACCCGCCCGACACGGGGGGCACGCCGCCGCAGCGAA
CAGGACCCTATTTTTCTTTTTTTATTTGACCGGAAAACCGCCCGCCACCC
CGAAAACCGAAGGACGCCCGCCCGCCCCCCCACACGCGCCATAAAAACAC
GCTACCGCCCGCGACAGACACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_p22.b1 MSMg01no378_p22.b1 CHROMAT_FILE:
MSMg01no378_p22.b1 PHD_FILE: MSMg01no378_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:37 2005
         (468 letters)



>mm_chr11_101832280_101833147
          Length = 868

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacttggtctttagcacacccgccacccccaagtgggtgtggataatgccatg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattctcacttggcctttagcacacccgccacccccaagtgggtgtggataatgccatg 609

                                                                       
Query: 65  gccagcagggggcactgttgaggcgggtgcctttccaccttaagttgctcatagtattta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 608 gccagcagggggcactgttgaggcgggtgcctttccaccttaagttgcttatagtattta 549

                                                                       
Query: 125 agatgctaaatgttttaatcaagagaagcactgatcttataatacgaggataagagattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agatgctaaatgttttaatcaagagaagcactgatcttataatacgaggataagagattt 489

                                                                       
Query: 185 tctcacaggaaattgtctttttcataattcttttacaggctttgtcctgatcgtagcata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctcacaggaaattgtctttttcataattcttttacaggctttgtcctgatcgtagcata 429

                                                                       
Query: 245 gagagaatagctggatatttaacttgtattccattttcctctgccagcgttaggttaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gagagaatagctggatatttaacttgtattccattttcctctgccagcgttaggttaact 369

                                                                       
Query: 305 ccgtaaaaagtgattcagtggaccgaagaggctcagagggcaggggatggtggggtgagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccgtaaaaagtgattcagtggaccgaagaggctcagagggcaggggatggtggggtgagg 309

                                                                       
Query: 365 cagagcactgtcacctgccaggcatgggaggtcctggcatccgggaggaaaaggaaagtt 424
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 308 cagagcactgtcacctgccaggcatgggaggtcctgccatccgggaggaaaaggaaagtt 249

                                                       
Query: 425 tagcctctagtctaccaccagtgttaacgcactctaaagttgta 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tagcctctagtctaccaccagtgttaacgcactctaaagttgta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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