Query= MSMg01no379_d15.b1 MSMg01no379_d15.b1 CHROMAT_FILE:
MSMg01no379_d15.b1 PHD_FILE: MSMg01no379_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:56 2005
(502 letters)
>mm_chr11_4583853_4584755
Length = 903
Score = 781 bits (404), Expect = 0.0
Identities = 441/462 (95%), Gaps = 16/462 (3%)
Strand = Plus / Minus
Query: 51 ttctcctactgagcaacagcctcagtattcatctttagggacttcaccaccaagtagtac 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 ttctcctactgagcaacagcctcagtattcatctttagggacttcaccaccaagtagtac 844
Query: 111 cattcatctcactgaggctgaagggctggggtaacaggctggtttcaaagggtgttctgg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 843 cattcatctcactgaggctgaagggctggggtaacaggctggtttcaaagggtgtcctgg 784
Query: 171 agagctaaaagacacaagcagcagctcctcagggggcattgcggttgatccggcccaaag 230
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 783 agagctaaaagacacaagcagcagctcctcagggggcattgcggttga------ccaaag 730
Query: 231 tgctagaaaacacaaga---------gtcctctcattcagactgctaccaggaaacct-g 280
||||||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 729 tgctagaaaacacaagagacggtgatgtcctctcagccagactgctaccaggaaacctgg 670
Query: 281 gtgtcctctaggtggctgtaagaagagagagccaagagcagatgagggctgctccaggga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtgtcctctaggtggctgtaagaagagagagccaagagcagatgagggctgctccaggga 610
Query: 341 agagcagcaggcaaggcagatgaagatcaggagctcccaagctcatcagccttgcatgac 400
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agagcagcaggcaaggcggatgaagatcaggagctcccaagctcatcagccttgcatgac 550
Query: 401 acagcagcttggtctgagtttagtcagggagaaaagaaatgactgtgccactgagctggg 460
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 549 acagcagcttggtctgagtttagtcagggagaaaagaaatgactgtgccgctgagctggg 490
Query: 461 ccgctgctaagcgcttctaggaggaaacagtttccctgctgt 502
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccgctgctaagcgcttctaggaggaaacagtttccctgctgt 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_d15.g1 MSMg01no379_d15.g1 CHROMAT_FILE:
MSMg01no379_d15.g1 PHD_FILE: MSMg01no379_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:56 2005
(313 letters)
>mm_chr11_4394617_4395329
Length = 713
Score = 404 bits (209), Expect = e-117
Identities = 267/317 (84%), Gaps = 50/317 (15%)
Strand = Plus / Plus
Query: 1 attgtttgcattcaaaataaagttttgctttttaatagtttctctctctctctctctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 attgtttgcattcaaaataaagttttgctttttaatagtttctctctctctctctctctc 294
Query: 61 tctctctctctctctctctctctctctctctctctctctctctctctctctctctgtgtg 120
||||||||||||||||||||||||| |
Sbjct: 295 tctctctctctctctctctctctct----------------------------------g 320
Query: 121 tgtgtgtgtgtgtgtgtgtgtgttctacacaagaacaacaaagtgttgcactgagccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgtgtgtgtgtgtgtgtgttctacacaagaacaacaaagtgttgcactgagccatc 380
Query: 181 tttctggccctaaaattgagtttttaaagaaagaaattaagtatctgtgaggtatgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctggccctaaaattgagtttttaaagaaagaaattaagtatctgtgaggtatgagag 440
Query: 241 actac----tttttactgatccggtctttttatgacaagtctctgagtctctggcccaga 296
||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 actacacagt----actgatccggtctttttatgacaagtctctg--------gcccaga 488
Query: 297 gctaagtgacagatgca 313
|||||||||||||||||
Sbjct: 489 gctaagtgacagatgca 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
