Query= MSMg01no379_e18.b1 MSMg01no379_e18.b1 CHROMAT_FILE:
MSMg01no379_e18.b1 PHD_FILE: MSMg01no379_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:01 2005
(521 letters)
>mm_chr11_25146190_25147110
Length = 921
Score = 872 bits (451), Expect = 0.0
Identities = 473/485 (97%), Gaps = 8/485 (1%)
Strand = Plus / Minus
Query: 45 gatccttctactttccaagtgctgagattaaaggcatgaatcaatatgtttggcttttta 104
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gatcctcctactttccaagtgctgagattaaaggcatgaatcaatatgtttggcttttta 862
Query: 105 aaacaaatttaaagcaaaaaagatcaagcttaactgttttaacattccattccattgtgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaacaaatttaaagcaaaaaagatcaagcttaactgttttaacattccattccattgtgt 802
Query: 165 ttcattttttccatatgcagatatattta--------acacatacacacacacacacaca 216
||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 801 ttcattttttccatatgcagatatatttaacacacacacacacacacacacacacacaca 742
Query: 217 cacacacacacacacacacatctttgttgttttgatgatcttcagtccattactgctggc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacacacacacacacacacatctttgttgttttgatgatcttcagtccattactgctggc 682
Query: 277 tgactacatttaatccctctggtattcagagatagaaactgttgcaaaacacactaatgg 336
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tgactacatttaatccctctggtattcagggatagaaactgttgcaaaacacactaatgg 622
Query: 337 gcagatcactcctggtggaagttttactacacttagcttgttccttttggtatcctaacc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagatcactcctggtggaagttttactacacttagcttgttccttttggtatcctaacc 562
Query: 397 aatacctaatatattgaaaggaaaagcttgtttttatcagacttaccccctgctctttga 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatacctaatatattgaaaggaaaagcttgtttttatcagacttaccccctgctctttga 502
Query: 457 ttcagacctaccgagaggtgtcatcttacatagctataagttaaccagagttcctttgaa 516
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcagacctaccgacaggtgtcatcttacatagctataagttaaccagagttcctttgaa 442
Query: 517 catgg 521
|||||
Sbjct: 441 catgg 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_e18.g1 MSMg01no379_e18.g1 CHROMAT_FILE:
MSMg01no379_e18.g1 PHD_FILE: MSMg01no379_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:01 2005
(231 letters)
>mm_chr11_24991817_24992447
Length = 631
Score = 439 bits (227), Expect = e-128
Identities = 230/231 (99%)
Strand = Plus / Plus
Query: 1 cagttctgtttcaatacataaagtccatagggaatcaaaccaatttgtcaacaccatgta 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttctgtttcaatacataaggtccatagggaatcaaaccaatttgtcaacaccatgta 260
Query: 61 gagataagcatgaagctgatgaggattcctcttggccttttcttccttaggtgtcttagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagataagcatgaagctgatgaggattcctcttggccttttcttccttaggtgtcttagg 320
Query: 121 aacctttctgagtttaatgcttatccagctgaggtgtggtgggagaattatgagctggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacctttctgagtttaatgcttatccagctgaggtgtggtgggagaattatgagctggag 380
Query: 181 ccaaaaacaccacaaaagaaaatcagttttgcatgttctcagagactaacc 231
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaaaacaccacaaaagaaaatcagttttgcatgttctcagagactaacc 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
