BAC Information

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BAC

Clone NameMSMg01-379J11
Chromosome11 (Build37)
Map Location 106,222,883 - 106,223,370
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a
Downstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379J11.T7 (MSMg01no379_j11.b1)MSMg01-379J11.TJ (MSMg01no379_j11.g1)
ACCAG484166AG484167
length813731
length of high quality
(start - end)		80 (129 - 208)483 (73 - 555)
definitionCHROMAT_FILE: MSMg01no379_j11.b1 PHD_FILE: MSMg01no379_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:24 2005CHROMAT_FILE: MSMg01no379_j11.g1 PHD_FILE: MSMg01no379_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCTTGTTGTCGCTAAAAGAATCACTATTTCAAAAGAGGAGCCGCGG
AAATCAACTTTACTACATGTAATGGGGCTCCAAGCCTTTCACTTGGCCTT
CCTGGAGATGATGTTGCCCCATATTCCATGTGACTGGGGCCTGAACCACC
TGTGCCCATAACACTTGTTTGTTTGTTGTTTGCTTGTTTGTTTGTTTGTT
TGACAGTCAGGCACTAGAGAACTGGTTCACTACTAAAGGGCTTATCTTTT
CTCATCGCCCACAGTGGCCGGCTCACAGCAGTTGTCACTCCAGTTCCAGG
AAATCCGACCTCTTTTTCTCTTGCCTCTTCCAGAACACTTGCTTGCCTCC
TAGTACTCATGTTCGCTCGCTTCACAATCTCCTTTTCTTCCTTATATTTG
ATTCCTTCTCTCCGACCTTGTCTCCTCCCTTGTATTTGTTCTCTTTCCTC
ATTTCCTCCCTATCCCCTCTTTATTTACATTATTTATTTTAACCCACACT
CACATTTTCTGACCTATCTATATCACCCCCCTCATCCCTCTTTTCTTTAT
TTATTTCCCTTATTTTTTCCCTCTTCCTTTTTATCTCCTTTTTCTCCCCC
CTTATCACTTTTCCTCCCCATTCTCTTATCTTTTTTCTTATCACCCCTCT
ACCTTTCACTTCCCCTTATACTTATTCCCACCCCTCCTTTTATCCATATT
TTTCCCTCCCCCTCCTCCCCCCTTTGCCCCCTCTCCCCCTATTTTTCCTT
CTTTTTCTCCTTCCTCATAAGCCCCCTCTTCTCCCTTTTCCCTTTCTCCC
TCTCTCCCCTTCN

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCTCTATACCTTCTTCCATCAGCCCC
CCTCACATGGGCAGGCTAAAAAGCCTCCTTGCAGAGACCCTGGGAGCAGA
CCGTGGCTACCAGCCATCCTGCAACACCTGAGATCAAGGAAGACTGACAG
GTGTCCTGCTCTGACAGCTGTCACCTGTCCTCAGGAAGCCTGTGCTGCCT
CCTGCTCTTGGGGACATTACCTACAAGTTGTTATCAGGAAAGGTCTCTCT
TCTCTTCCCCTTCTCTCTTGGAGCCTCTTTTTCAAAACTGGACTGACCGA
GACCTGCCAACCTCAACAAAGACACAAGGGAACAGAGAACCTTACTACAG
CAGACTCCATGGCCTCTGCCTTATTTCAAAACTCCACAGCTACCCAGATG
AAGGGCTCCCCAGCCCACATAAGAGAGGCCCTTACTTCTAGAGGAGACAG
ATAGGAATAAAAACTAAAACAACCGTTAATCCCCTGCCGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGCTTCCCTTCTCTTTTTCTTTTCCTTTTTTCC
TCTCCTTCTCCCTCTTTTTTTCCCTCTTCTTTTCCCTTTCTCCCTTATCC
CCCTCCCTTTTTTTATTCCCTCCTTTTCTTTTTCTCTCACCCTTTTCTTT
CTCCCTTTTCCCCCCTCCCCCCCCCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_j11.g1 MSMg01no379_j11.g1 CHROMAT_FILE:
MSMg01no379_j11.g1 PHD_FILE: MSMg01no379_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:24 2005
         (483 letters)



>mm_chr11_106222692_106223566
          Length = 875

 Score =  768 bits (397), Expect = 0.0
 Identities = 462/497 (92%), Gaps = 26/497 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ctctataccttcttccatcagcccccctcacatgggcaggctaaaaagcctccttgcaga 63
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 192 ctctataccttcttccatcagcccccatcacatgggcaggctaaaaagcctccttgcaga 251

                                                                       
Query: 64  gaccctgggagcagaccgtggctaccagccatcctgcaacacctgagatcaaggaagact 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gatcctgggagcagaccgtggctaccagccatcctgcaacacctgagatcaaggaagact 311

                                                                       
Query: 124 gacaggtgtcctgctctgacagctgtcacctgtcctcaggaagcctgtgctgcctcctgc 183
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 gacaggtgtcctcctctgacagctgccacctgtcctcaggaagcctgtgctgcctcctgc 371

                                                                       
Query: 184 t------------cttggggacattacctacaagttgttatcaggaaaggtctctcttct 231
           |            |||||||||||||||||||||||||||||||||||||    ||||| 
Sbjct: 372 tcctcctcctgcccttggggacattacctacaagttgttatcaggaaagg----tcttc- 426

                                                                       
Query: 232 cttccccttctctcttggagcctctttttcaaaactggactgaccgagacctgccaacct 291
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 --tccccttctctcttggagcctctttttcaaaactggactgaccgagacctgccaacct 484

                                                                       
Query: 292 caacaaagacacaagggaacagagaaccttactacagcagactccatggcctctgcctta 351
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 485 caacaaagacacaagggaacagaaaaccttactacagcagactccatggcctctgcctta 544

                                                                       
Query: 352 tttcaaaactccacagctacccagatgaagggctccccagcccacataagagaggccctt 411
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 545 tttcaaaactccacagctacccagatgaagggctccccagcccatgtaagagaggccctt 604

                                                                       
Query: 412 acttctagaggagacagataggaataaaaactaaaa-caaccgttaatcccctgcc---- 466
           ||||| |||||| |||  |||||||||||||||||| |||||||||||||||||||    
Sbjct: 605 acttccagaggaaaca--taggaataaaaactaaaaacaaccgttaatcccctgccattt 662

                            
Query: 467 gtgtgtgtgtgtgtgtg 483
           |||||||||||||||||
Sbjct: 663 gtgtgtgtgtgtgtgtg 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 875
Length adjustment: 10
Effective length of query: 473
Effective length of database: 865
Effective search space:   409145
Effective search space used:   409145
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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