Query= MSMg01no379_k01.b1 MSMg01no379_k01.b1 CHROMAT_FILE:
MSMg01no379_k01.b1 PHD_FILE: MSMg01no379_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:26 2005
(269 letters)
>mm_chr11_62426207_62426875
Length = 669
Score = 400 bits (207), Expect = e-116
Identities = 253/269 (94%), Gaps = 4/269 (1%)
Strand = Plus / Minus
Query: 1 tgaactctagacgtgccatctctgtgtcacgtcccatcctcatatccccattctttgtct 60
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct: 467 tgaactctagacgtgccatctctgtatcatgtcccatcctcatatccccattctttggct 408
Query: 61 gagaatgtgtcaggtgtcaccattaccagtccctacccctgctcctcaccccaggcaagc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gagaatatgtcaggtgtcaccattaccagtccctacccctgctcctcaccccaggcaagc 348
Query: 121 ctgtactgataaaggccctcattgtccatacagtggccaccacagtgactcgagccgccc 180
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 347 ctgtactgagaaaggccctcattgtccatacagtggctaccacagtgactcgagccaccc 288
Query: 181 tcttccagg--cacctattgcttcactcacagttgtctcggcgccttctctatctgtcca 238
||||||||| | || |||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct: 287 tcttccaggttc-cc-attgcttcactcacagctgtctcggtgccttctctgtctgtcca 230
Query: 239 gtctcctctctgttcccctcatcttattc 267
|||||||||| |||||||||| |||||||
Sbjct: 229 gtctcctctccgttcccctcagcttattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no379_k01.g1 MSMg01no379_k01.g1 CHROMAT_FILE:
MSMg01no379_k01.g1 PHD_FILE: MSMg01no379_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:26 2005
(489 letters)
>mm_chr11_62251844_62252732
Length = 889
Score = 930 bits (481), Expect = 0.0
Identities = 487/489 (99%)
Strand = Plus / Plus
Query: 1 ttaagtactaaaaacatgaaatgtccttctaataaattataactgcagctatacaaacaa 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagtactaaaaacgtgaaatgtccttctaataaattataactgcagctatacaaacaa 260
Query: 61 aaccacaatttccaggcaaagctcctcaaatatttacttgaaagaggttattaatgtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccacaatttccaggcaaagctcctcaaatatttacttgaaagaggttattaatgtttg 320
Query: 121 ataaggaaagctggagatatggctctgtagttaagaacattgactgctcttgcagaagat 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaggaaagctggagatacggctctgtagttaagaacattgactgctcttgcagaagat 380
Query: 181 gggggttcaattcccagcaccacatagcagctcacaactgtctatacctcaagttccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggttcaattcccagcaccacatagcagctcacaactgtctatacctcaagttccagt 440
Query: 241 ggatcagactctctcacacagatatatatgtagatcaaacaccaaatatacttaaaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatcagactctctcacacagatatatatgtagatcaaacaccaaatatacttaaaaatg 500
Query: 301 cagtataaagtttgaaacaatgtatcttttactctacacagactacggtagatacacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtataaagtttgaaacaatgtatcttttactctacacagactacggtagatacacaga 560
Query: 361 agacactgtagcccctaggacagtgcaggaacagctctgacttttgtcttgtctttccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacactgtagcccctaggacagtgcaggaacagctctgacttttgtcttgtctttccag 620
Query: 421 gggcagtgcccatgcacagcactggcctttccttgtccttatttaaaagccctcctttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcagtgcccatgcacagcactggcctttccttgtccttatttaaaagccctcctttaa 680
Query: 481 tgaattcag 489
|||||||||
Sbjct: 681 tgaattcag 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
