BAC Information

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BAC

Clone NameMSMg01-380D17
Chromosome11 (Build37)
Map Location 97,598,220 - 97,598,768
singlet/doubletsinglet
Overlap genePip5k2b
Upstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3
Downstream gene2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380D17.T7 (MSMg01no380_d17.b1)MSMg01-380D17.TJ (MSMg01no380_d17.g1)
ACCAG484657AG484658
length716731
length of high quality
(start - end)		552 (65 - 616)535 (79 - 613)
definitionCHROMAT_FILE: MSMg01no380_d17.b1 PHD_FILE: MSMg01no380_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:14 2005CHROMAT_FILE: MSMg01no380_d17.g1 PHD_FILE: MSMg01no380_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAACTTTCCACCCTCCAAGAGCAGTGTACATTTCTTTTATAACAT
TTATTTTTATTTGTACGTGTGTGTGCACTTGTGTAAGTGCTTGCACATGC
ATATGGGGGAGAATGATAACCACATGCACGTGGGTGCCTCCAGAGGCTAC
AAAAGGATGTCGGATCCCCTTAGCTGGAGTTTCAGGAGGTTGTGAGCTTA
GGAACTGAACTCTGGTCCTCAGGAAGAGCAGCAAGTGCTCTTAACCACTG
AGCCACCTCTCCAGTGTAACTCTTACCACAACATGGCTTGAAAGGTTGTA
AGCTGGCTATCTTTGGGTTTCAGTTCCATCCTTACTATTGAATCTACAAC
GTAATAACAGAACATTTAAATTCAGATAGTACAACAGTGAACAATTATAG
CTCACCTTTGGTTTCCGTGGAGCCACGGATACAGATGGTGACTCACTCTG
GAGACCAGAAGTACTTTTCTCCCCTTAGTTGTACTAAATTTTATATCCCC
AGAGAGCTCGATTGGATTTCAGTTGAACAGTACTTATTGAAATAGCTACT
ATATGCATCTGTCTATGTTGGGTATATGTGTGGGAGGAGGGCGCAGTTCT
CTTCTTTTCTTTCCCCCCCTTTCCCCTTCCCTTTTCCCCCCTCCTCCTCC
TTTTTCCTCTTTTCCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGTAACTTCTCTGCTAGAA
TCTGGGTTCTAGGGACCAAACTTGGCTATAGAAAGAAAATCTTGTATATT
CTATGGATGCATCACCTGGCAATTAAAAAACAAACAAACAAAAACCTATG
CTCCACAGGAAAGGGTAGAGTAGAAGGTGGGAGGGACATCCAGGAGGCAG
AAAGAATTCTGGGATAGAGCGAGGAGTGGGAAGATTTGTCCAGGGAAGAT
TTGAGAAGTCGGACACATGGTACTTGAGCACAGGTAATCGACTACGTGGC
AGAATACAGGTTAGAACAAATGGGTTAATTTAAGTTACCATCTAGGGCTG
GGGAGATGGCCCAACGGTTAACTTACCATCTAGTAAGAGAAGGCCTAGCT
ATATGGCCAAGGTATTTGTAAGTAAATTTTGAGTTTCGGTCTTAATTCTG
GAAGTGTGGGGCTGGGAGGAAGACCCAGACTCTAACGTCTCTAACTCTAA
CAAACTCTAACTCTAACTCTAACTCTAACAAAGCCAGTCATGAGGCTCAA
GAACCTGTCTCACACAGACACACACACAGACACACTCAGACACACACACC
CCACACAAAAACACATCCCACACAGAAACACACACACTCCTACACACCAC
ACAGAATCAGACACCCCCTCCACCCGGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_d17.b1 MSMg01no380_d17.b1 CHROMAT_FILE:
MSMg01no380_d17.b1 PHD_FILE: MSMg01no380_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:14 2005
         (552 letters)



>mm_chr11_97598017_97598968
          Length = 952

 Score = 1029 bits (532), Expect = 0.0
 Identities = 546/552 (98%), Gaps = 3/552 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctccaagagcagtgtacatttcttttataacatttatttttatttgtacgtgtgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 accctccaagagcagtgtacatttcttttataacatttatttttatttgtacgtgtgtgt 263

                                                                       
Query: 61  gcacttgtgtaagtgcttgcacatgcatatgggggagaatgataaccacatgcacgtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 264 gcacttgtgtaagtgcttgcacatgcatatgggggagaatgataac---atgcacgtggg 320

                                                                       
Query: 121 tgcctccagaggctacaaaaggatgtcggatccccttagctggagtttcaggaggttgtg 180
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tgcctccagaggctagaaaaggatgtcggatccccttagctggaatttcaggaggttgtg 380

                                                                       
Query: 181 agcttaggaactgaactctggtcctcaggaagagcagcaagtgctcttaaccactgagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttaggaactgaactctggtcctcaggaagagcagcaagtgctcttaaccactgagcc 440

                                                                       
Query: 241 acctctccagtgtaactcttaccacaacatggcttgaaaggttgtaagctggctatcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctctccagtgtaactcttaccacaacatggcttgaaaggttgtaagctggctatcttt 500

                                                                       
Query: 301 gggtttcagttccatccttactattgaatctacaacgtaataacagaacatttaaattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtttcagttccatccttactattgaatctacaacgtaataacagaacatttaaattca 560

                                                                       
Query: 361 gatagtacaacagtgaacaattatagctcacctttggtttccgtggagccacggatacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatagtacaacagtgaacaattatagctcacctttggtttccgtggagccacggatacag 620

                                                                       
Query: 421 atggtgactcactctggagaccagaagtacttttctccccttagttgtactaaattttat 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 atggtgactcactctggagaccagaagtacttttctcctcttagttgtactaaattttat 680

                                                                       
Query: 481 atccccagagagctcgattggatttcagttgaacagtacttattgaaatagctactatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atccccagagagctcgattggatttcagttgaacagtacttattgaaatagctactatat 740

                       
Query: 541 gcatctgtctat 552
           ||||||||||||
Sbjct: 741 gcatctgtctat 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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