Query= MSMg01no380_e24.b1 MSMg01no380_e24.b1 CHROMAT_FILE:
MSMg01no380_e24.b1 PHD_FILE: MSMg01no380_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:21 2005
(513 letters)
>mm_chr11_5065988_5066900
Length = 913
Score = 932 bits (482), Expect = 0.0
Identities = 500/506 (98%)
Strand = Plus / Minus
Query: 8 ggaattctgccatcttcatctagaaactttggacatagaacaggacctgagtcagggttc 67
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 713 ggaattctgccatcttcatctagaaactttggacatagaacaggacctgggtcagggttc 654
Query: 68 caggtgtcgctaagaaattgacggagaatgtccccgagaaagctgtccacagctcccttc 127
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 653 caggtgtcgctaagaaattgacggagaatgtccccgagaaagctgtccccggctcccttc 594
Query: 128 ctccagacccctacagtcgactctccctgtgctctccacccaagagcatcctggctccca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ctccagacccctacagtcgactctccctgtgctctccacccaagagcatcctggctccca 534
Query: 188 gagcccaagatggccaatgctgctccttgaccaccccactctggctcttaaagagaccca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gagcccaagatggccaatgctgctccttgaccaccccactctggctcttaaagagaccca 474
Query: 248 gcaaggactgatccccgcggggaaattgagcccttgctgcttcctggcaggaaagtaaga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gcaaggactgatccccgcggggaaattgagcccttgctgcttcctggcaggaaagtaaga 414
Query: 308 ggacagcctggggagtcagcacacactcaccttgtgacacaactctgtgactgggtgtgc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggacagcctggggagtcagcacacactcaccttgtgacacaactctgtgactgggtgtgc 354
Query: 368 acccctaaacactgaacacaggacctcattgaattcaggcatgttgatggccggagctct 427
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 353 acccctaaacactgaacacaggacctcatcgaagtcaggcatgttgatggccggagctct 294
Query: 428 ggatcacaaggtgtttacatgccatgttcatggtgcatacctcataatagccaaaacaag 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggatcacaaggtgtttacatgccatgttcatggtgcatacctcataatagccaaaacaag 234
Query: 488 gggtaacctcaatgtctacccttgga 513
||||||||||| ||||||||||||||
Sbjct: 233 gggtaacctcagtgtctacccttgga 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_e24.g1 MSMg01no380_e24.g1 CHROMAT_FILE:
MSMg01no380_e24.g1 PHD_FILE: MSMg01no380_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:21 2005
(508 letters)
>mm_chr11_4912267_4913174
Length = 908
Score = 967 bits (500), Expect = 0.0
Identities = 506/508 (99%)
Strand = Plus / Plus
Query: 1 ctgtctccaggctgaggaagtgaaacccttagcaagctgtttgagctcaggcttctggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtctccaggctgaggaagtgaaacccttagcaagctgtttgagctcaggcttctggga 260
Query: 61 aaacaggaaaagcctgcatgtgagatcaaccaactcccccacctcaccctcacccagtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaggaaaagcctgcatgtgagatcaaccaactcccccacctcaccctcacccagtac 320
Query: 121 cccaattccattcagcctttaggaatcagggcaagggagaagactgaggagagcttgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaattccattcagcctttaggaatcagggcaagggagaagactgaggagagcttgcag 380
Query: 181 tgcatttttaggagtctagctgagcagcccttcaagatcctcgttcctgtttcttcactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatttttaggagtctagctgagcagcccttcaagatcctcgttcctgtttcttcactc 440
Query: 241 caacatggcctccaggctcctatcagcttcctttctcttcaccattcctgtctcttgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacatggcctccaggctcctatcagcttcctttctcttcaccattcctgtctcttgtcc 500
Query: 301 ttcctaaagccaagggcctaaagctgctctctacctccacctagttctctggaaaattgg 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 501 ttcctaaagccaagggcctaaagctgctctctgcctccacctagttctctgggaaattgg 560
Query: 361 tgcaagaagtcatcttacacatggggataaactgctcatggctgtcttctttccttaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaagaagtcatcttacacatggggataaactgctcatggctgtcttctttccttaggg 620
Query: 421 gagatctttgagctgaaggcagagcttaacagtgacaagaaggagaagaagaaggaggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagatctttgagctgaaggcagagcttaacagtgacaagaaggagaagaagaaggaggca 680
Query: 481 gtgaagaaagtgattgcatcaatgactg 508
||||||||||||||||||||||||||||
Sbjct: 681 gtgaagaaagtgattgcatcaatgactg 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
