Query= MSMg01no380_h19.b1 MSMg01no380_h19.b1 CHROMAT_FILE:
MSMg01no380_h19.b1 PHD_FILE: MSMg01no380_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:34 2005
(584 letters)
>mm_chr11_103987958_103988941
Length = 984
Score = 1067 bits (552), Expect = 0.0
Identities = 573/580 (98%)
Strand = Plus / Minus
Query: 5 gaattcttgtgtctcttccttgccttgcaggtgtgagcttgcatctatcaagggcaccag 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gaattcttgtggctcttccttgccttgcaggtgtgagcttgcatctatcaagggcaccag 690
Query: 65 gtacacttatctgtggcacaattaccatatatttgcatttattaagcagggacaagaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtacacttatctgtggcacaattaccatatatttgcatttattaagcagggacaagaagg 630
Query: 125 ccattgacatttattggttggttctttttattaaaattttttttataactttattattta 184
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 629 ccattgacatttattggttggttctttttattaacatttttaaaataactttattattta 570
Query: 185 aaaacatgcaaataaattgtaaaatttttgtaaaataattgtagaagttcattgagttac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaaacatgcaaataaattgtaaaatttttgtaaaataattgtagaagttcattgagttac 510
Query: 245 atagatttgaggtctggttaattttggtatatgattttttttgttgtttatctataatat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atagatttgaggtctggttaattttggtatatgattttttttgttgtttatctataatat 450
Query: 305 ttacttggttcttctgaaagaaaacttttttctttcaagacaccgtttctctgtgtaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttacttggttcttctgaaagaaaacttttttctttcaagacaccgtttctctgtgtaaca 390
Query: 365 gccatagctgtcctagaaccctcttgtagatccttctggcctctaactcacagaggtacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gccatagctgtcctagaaccctcttgtagatccttctggcctctaactcacagaggtacc 330
Query: 425 taagccacctctgcttattgagtgctgggattaaggcatgcaccaccatgtctggctccg 484
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taagccgcctctgcctattgagtgctgggattaaggcatgcaccaccatgtctggctccg 270
Query: 485 caacaaaactttttaaaggtgcatggaaataagagggtttgcacaaatggaaaggtatct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caacaaaactttttaaaggtgcatggaaataagagggtttgcacaaatggaaaggtatct 210
Query: 545 ttaaaaattctggaagtggagcaattttttttaaaggcag 584
||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttaaaaattctggaagtggagcaattttttttaaaggcag 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_h19.g1 MSMg01no380_h19.g1 CHROMAT_FILE:
MSMg01no380_h19.g1 PHD_FILE: MSMg01no380_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:35 2005
(512 letters)
>mm_chr11_103830205_103831116
Length = 912
Score = 951 bits (492), Expect = 0.0
Identities = 507/512 (99%), Gaps = 1/512 (0%)
Strand = Plus / Plus
Query: 1 agctacaatggggaatgtctttgaaaagctgtttaaaagcctatttgggaaaaaggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctacaatggggaatgtctttgaaaagctgtttaaaagcctatttgggaaaaaggaaat 260
Query: 61 gcggattctcatggtgggcttagatgcagctggcaaaacgacgatcttgtacaaattgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcggattctcatggtgggcttagatgcagctggcaaaacgacgatcttgtacaaattgaa 320
Query: 121 gctaggagagattgtgacaaccatccctaccataggtatatccatgactgtggcctttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctaggagagattgtgacaaccatccctaccataggtatatccatgactgtggcctttcc 380
Query: 181 agttcatagtttagcatgttacaatttgaagtgttactttttcaaagttttcatttgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttcatagtttagcatgttacaatttgaagtgttactttttcaaagttttcatttgtgt 440
Query: 241 atgtatgtgtcatatgtgtatgcatgcgcacacattttctctatcactctccaccttact 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 atgtatgtgtcatatgtgtatgcatgcgcacacattttctctatcactctctaccttact 500
Query: 301 tttgagacagagcgtctttgccgaacccagagcctgtcattttgacaaggctctctgtct 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgagacagagcgtctttgtcgaacccagagcctgtcattttgacaaggctctctgtct 560
Query: 361 gtcaggcttgagggtctccctgcagcactggttacagacatgtgccatcaggcctatctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcaggcttgagggtctccctgcagcactggttacagacatgtgccatcaggcctatctt 620
Query: 421 ctgcatgtgtgggaggatatctgatttcaggtcctcatgcttgatcggcaagcactttac 480
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcatgtgtgggaggg-atctgatctcaggtcctcatgcttgatcggcaagcactttac 679
Query: 481 cctctgaatcattcctccagcccctgatgtgc 512
||||||||||||||||||||||||||||||||
Sbjct: 680 cctctgaatcattcctccagcccctgatgtgc 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
