BAC Information

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BAC

Clone NameMSMg01-380N06
Chromosome11 (Build37)
Map Location 89,929,932 - 89,930,334
singlet/doubletsinglet
Overlap genenone
Upstream geneGm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp, Tmem100
Downstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N06.T7 (MSMg01no380_n06.b1)MSMg01-380N06.TJ (MSMg01no380_n06.g1)
ACCAG485112AG485113
length767792
length of high quality
(start - end)
400 (62 - 461)305 (65 - 369)
definitionCHROMAT_FILE: MSMg01no380_n06.b1 PHD_FILE: MSMg01no380_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:00 2005CHROMAT_FILE: MSMg01no380_n06.g1 PHD_FILE: MSMg01no380_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTTCT
TTTCCCTTTCCACTCAGGATGGTAGAACGAGGAAAATCCTTGTCTTTGTG
AAATTGTCAGGGTCATCATGATCTCATGAAGCACCAAATAGAAGCGAGAC
ATTTCTCGGGGGGGGGGGCGGACTAGCAATCATAGAAGGTCTTAGGATGG
CTGAGAACTGAAGAGAGCCACTGTCATTGAAGTTCAAAGAAGGGAGCCAC
TTTCAAAGTTCAACTAGGTGAAAGCTGTAGCATCTTGTCTGAAAACTAGG
CCCTTGTGTATTTACCTGTGATTGAAGGAGAATCATGTGATCATATCCTA
AAGCCCGGTCAGTCTGTGGGTTAAGATCTCCCAACCTAGTCTAGTCTCCG
TCTTCCTTTCCCCGTTCATTGTGCAGAGAGGAAGTAGATGAGGACAGGCA
AACATGGCAGGCAGCCTATGACAGAGCTGTAATGAATGGGATAGAGGTCT
TCTGGCACCTTGTCCTCTGCTTGGTTTAGCTGATTTATGATATGAGGACA
TTCTATCTAATCCAAGCTTACCCGTGACTAAGAACTATGATACGGCCTCC
GCTCACGTGTTGACCCCTTCCCGCAAAACCTTGGGAGGGAAAATGAGCCA
CGCACGGGTTAGTTATTGTAGTGGGGGACCTGCTTGCGCGCCTACCGGTA
CCTGCGTGCGCTTTCTCCCAGCTCCCATACCCGCCCTTCCCTCGTTATTT
TTTTCATATTTTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTT
GGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTT
TTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTAT
ATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGA
TGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGG
ATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAACTTCTCTATCTT
TGTTGGATCTTTCTGTGGTTTAGGTATCATAGTAATAGTGGTTTCATAAT
ATGCCCCCCCCCACAGTACTTTTCTACTTCTATCTTGTGAAAAAGTTTGT
GCATAACTGGAATTATATCTTCTTTGAATGTCTGATATATCTCTGTTCTA
CACTCGTCTGTCTCTGTGCCTTTTTTTGCCTTGTCGTCTATTTTATCTCT
GCTTCTTTTTTTTCTCTCCACATTTCCCTGATCTCAATCCTCCTTCTTTA
TCTGCTTTCCATTTATAACCCTTTTTTTTCCCCCCAATCCTTCCTTCTTT
TTTTCTTCTTCTTCCCTCCCTTCTTCTCATTTTTTACCTCCCTTTTTCTC
CTTTCCTTTACTCCACTCTCCCTTTTCTCTTTCACCTTCCCTCCATTCTC
CTTTATTTTTTTGCCTTCCCGTCCTCCTTTTTCCCCCTCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n06.b1 MSMg01no380_n06.b1 CHROMAT_FILE:
MSMg01no380_n06.b1 PHD_FILE: MSMg01no380_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:00 2005
         (400 letters)



>mm_chr11_89929732_89930534
          Length = 803

 Score =  764 bits (395), Expect = 0.0
 Identities = 400/403 (99%), Gaps = 3/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcaggatggtagaacgaggaaaatccttgtctttgtgaaattgtcagggtcatcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 actcaggatggtagaacgaggaaaatccttgtctttgtgaaattgtcagggtcatcatga 544

                                                                       
Query: 61  tctcatgaagcaccaaatagaagcgagacatttctc---gggggggggggcggactagca 117
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 543 tctcatgaagcaccaaatagaagcgagacatttctcggggggggggggggcggactagca 484

                                                                       
Query: 118 atcatagaaggtcttaggatggctgagaactgaagagagccactgtcattgaagttcaaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atcatagaaggtcttaggatggctgagaactgaagagagccactgtcattgaagttcaaa 424

                                                                       
Query: 178 gaagggagccactttcaaagttcaactaggtgaaagctgtagcatcttgtctgaaaacta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaagggagccactttcaaagttcaactaggtgaaagctgtagcatcttgtctgaaaacta 364

                                                                       
Query: 238 ggcccttgtgtatttacctgtgattgaaggagaatcatgtgatcatatcctaaagcccgg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggcccttgtgtatttacctgtgattgaaggagaatcatgtgatcatatcctaaagcccgg 304

                                                                       
Query: 298 tcagtctgtgggttaagatctcccaacctagtctagtctccgtcttcctttccccgttca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcagtctgtgggttaagatctcccaacctagtctagtctccgtcttcctttccccgttca 244

                                                      
Query: 358 ttgtgcagagaggaagtagatgaggacaggcaaacatggcagg 400
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttgtgcagagaggaagtagatgaggacaggcaaacatggcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 803
Length adjustment: 9
Effective length of query: 391
Effective length of database: 794
Effective search space:   310454
Effective search space used:   310454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)