BAC Information

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BAC

Clone NameMSMg01-381D22
Chromosome11 (Build37)
Map Location 93,877,167 - 93,877,632
singlet/doubletsinglet
Overlap geneSpag9
Upstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2, Nme1
Downstream geneLOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381D22.T7 (MSMg01no381_d22.b1)MSMg01-381D22.TJ (MSMg01no381_d22.g1)
ACCAG485431AG485432
length751810
length of high quality
(start - end)		470 (38 - 507)465 (65 - 529)
definitionCHROMAT_FILE: MSMg01no381_d22.b1 PHD_FILE: MSMg01no381_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:35 2005CHROMAT_FILE: MSMg01no381_d22.g1 PHD_FILE: MSMg01no381_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
GGCTGTTTAGCAGATAGGGATTTTCAGTAGATTTTTGGTTACAGAAGCTA
ATGAGCAAAACAATGAGCTATATCCCATGACTTTGTTTTTATGCTTGATG
ATACATAAGAGTTATGCAGCTTCTTTTTGCTAATTAAGAAGTGGGTGGTT
TCTCTAATTTTTGCTGTAGACTGTCCTATAAAAGCCTGAGCACTTAGAGA
GCTTGTGAGGGAGATGCTTGTAAGTTGAGCATCTTATAATCAAGTAAGAA
AATTTAGCCTTTTTTTGAGACATTCTTACTTTGTAGCCCAGGTTTCTGGA
ACTCATGTAGTTCATGCTGGCCTTGAACTCACAGCAGCCCTTTCAGCCTC
CCAAGTGCTGAGAATACAGATGTAAACTATGCTCAAGAAAATGTGGTTAT
TGAAGATAATATTTTAATTCTAAATTGATAATACTTTTGTATCAAGGATT
ATATAGTGTCTTAGTTTGGGTTTTATTGCTTTGAAGATACACCATGACTA
ANGCNACTCTTACAATCTTACAAGGACCCTGGCTTAAAGTTCCAGAGATT
CCGTCCATATCATCATGGCAGGAAATGTGGCCACGTCCTGGCGTATATGG
GGCTTGAAAAAAGAATTGAAATTTCTGCTTTTGGGACCGCCTGGACCCCA
GAAAGAAAGCCCCCTTTTTGGCTGGGAGAAAGGTTTTTCTTTAGGAACCC
C

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGTCATCCATGAGAAAGGGTTTCCATAGCTGATTA
GGTTGATTAGAAATGCACGATTCTTTGAGGCCAGCCTGGTCTGCAGAGTG
AGTTCCAGGATAGCCAGGGCTACACAGGGAAACCCTGTCTCAAAACAAAA
CAAGACAAAACAAACAAACAAACAAAAAAACCACACAAAAAAAAGAAAAA
AAAAGAAAAAAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAATGCACGATTCCTGTGAGCAACAAGGACCATGGGTAGGTAGCAGAGA
AGAGAATTCAAACCTGAAGACTTGGCCAGGCAAGACAGCACAGGCTGGCT
GTAATCCCAGTACTTCAGAAGCTGGGAGGAGGAAGTTATGTGTTCAAGGC
CACTCTGTACACAGCATGTGAATCAGGCCAACAAGATCCTGTTGTAAAAA
AANNNNNNNNNNNNANNAAAAAAAAAACCCAGACAAAGAACAAAGCAAAA
CCTAAACACCACCCAAAAATAATCTTGATGTCCCAAAATCCCCTTGAAAA
GGGCGAATTAGCCCCCAAAAGAAACCCCCCGCCCCTTGGAGCATAATTTA
AGTAGTATTTTCAAGAAGGGGACTCCCCCCACCAGGGAAATAGGGGGTTG
GTATTAAACCCTGGAAACCCGGATTTTTTTTTCCTAAAACCAACAAGATT
TTGAATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_d22.b1 MSMg01no381_d22.b1 CHROMAT_FILE:
MSMg01no381_d22.b1 PHD_FILE: MSMg01no381_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:35 2005
         (470 letters)



>mm_chr11_93876963_93877832
          Length = 870

 Score =  901 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaggctgtttagcagatagggattttcagtagatttttggttacagaagctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaggctgtttagcagatagggattttcagtagatttttggttacagaagctaa 264

                                                                       
Query: 65  tgagcaaaacaatgagctatatcccatgactttgtttttatgcttgatgatacataagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagcaaaacaatgagctatatcccatgactttgtttttatgcttgatgatacataagag 324

                                                                       
Query: 125 ttatgcagcttctttttgctaattaagaagtgggtggtttctctaatttttgctgtagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatgcagcttctttttgctaattaagaagtgggtggtttctctaatttttgctgtagac 384

                                                                       
Query: 185 tgtcctataaaagcctgagcacttagagagcttgtgagggagatgcttgtaagttgagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtcctataaaagcctgagcacttagagagcttgtgagggagatgcttgtaagttgagca 444

                                                                       
Query: 245 tcttataatcaagtaagaaaatttagcctttttttgagacattcttactttgtagcccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttataatcaagtaagaaaatttagcctttttttgagacattcttactttgtagcccag 504

                                                                       
Query: 305 gtttctggaactcatgtagttcatgctggccttgaactcacagcagccctttcagcctcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtttctggaactcatgtagttcatgctggccttgaactcacagcagccctttcagcctcc 564

                                                                       
Query: 365 caagtgctgagaatacagatgtaaactatgctcaagaaaatgtggttattgaagataata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caagtgctgagaatacagatgtaaactatgctcaagaaaatgtggttattgaagataata 624

                                                         
Query: 425 ttttaattctaaattgataatacttttgtatcaaggattatatagt 470
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttaattctaaattgataatacttttgtatcaaggattatatagt 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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