Query= MSMg01no381_j02.b1 MSMg01no381_j02.b1 CHROMAT_FILE:
MSMg01no381_j02.b1 PHD_FILE: MSMg01no381_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:01 2005
(622 letters)
>mm_chr11_47128295_47129318
Length = 1024
Score = 1062 bits (549), Expect = 0.0
Identities = 608/635 (95%), Gaps = 20/635 (3%)
Strand = Plus / Plus
Query: 5 gaattctttggtt-gtcgttttgtttttgtttgtttgtatttcttttgttgttgctg--- 60
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattctttgtttggt-gttttgtttttgtttgtttgtatttcttttgttgttgctgctg 251
Query: 61 ttgttatttttcccatttcacctcactgccaattaagtcttgatccctgg-tgatacgat 119
||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct: 252 ttgttatttttcccatttcacttcactgccaattaagtcttgatccctggct-atacgat 310
Query: 120 gatctcttctttttatggctgaattcaacctacccccaagtatatggatatatttgaaa- 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gatctcttctttttatggctgaattcaacctacccccaagtatatggatatatttgaaag 370
Query: 179 aaaa---------tgagtgcaatgagtattatagcgagatattcctgcctgtcatgccca 229
|||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 371 aaaaaaaaaactttg-gtgcaatgagtattatagcgagatattcctgcctgccatgccca 429
Query: 230 gggcaccatcacctgttcagagatctgtatctgtgtcccaatccttcctagtacattgca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gggcaccatcacctgttcagagatctgtatctgtgtcccaatccttcctagtacattgca 489
Query: 290 taacaactttaggtttgctgtctcagactggtgatcagaacatatggtttgcttcctggg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 taacaactttaggtttgctgtctcagactggtgatcagaacatatggtttgcttcctggg 549
Query: 350 cctggttctacctctaagcatcattgtgtgggataatgaagttttatataatcatggtac 409
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 550 cctggttctacctctaagcatcaatgtgtgggataatgaagttttacataatcatggtac 609
Query: 410 agctctctgtatagtctaatattaggaaaaaaag--atcttagaaagtataattcttaga 467
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 610 agctctctgtatagtctaatattagaaaaaaaagcgatcttagaaagtataattcttaga 669
Query: 468 attgattacaatatacatttcttgtctcatctaatactactgaacatacaagggtgagaa 527
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 670 attgattacaatatacatttcttgtctcatctaatactactgaacatacaagagtgagaa 729
Query: 528 actgaactttgagacagattgtgaacttttcaaagagtgtgcttatgatcagaggtttct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 actgaactttgagacagattgtgaacttttcaaagagtgtgcttatgatcagaggtttct 789
Query: 588 tagcatctatctctatagatcaaaccttggatgtt 622
|||||||||||||||||||||||||||||||||||
Sbjct: 790 tagcatctatctctatagatcaaaccttggatgtt 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1024
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1014
Effective search space: 620568
Effective search space used: 620568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_j02.g1 MSMg01no381_j02.g1 CHROMAT_FILE:
MSMg01no381_j02.g1 PHD_FILE: MSMg01no381_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:01 2005
(559 letters)
>mm_chr11_47300142_47301100
Length = 959
Score = 1050 bits (543), Expect = 0.0
Identities = 555/559 (99%)
Strand = Plus / Minus
Query: 1 cttgctattgcaactgcttgttctctgacattttgagaagactctaaaagggtttctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 952 cttgctattgcaactgcttgttctctgacattttgagaagactctaaaagggtttctatc 893
Query: 61 atgctttaatggcatgaaggtaacaatcactcctatgccatttgattctgtgctgctgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 atgctttaatggcatgaaggtaacaatcactcctatgccatttgattctgtgctgctgga 833
Query: 121 agagaatcccgcaaactaggtagtttatacttaatagaactgtgttgacctgtggttctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 agagaatcccgcaaactaggtagtttatacttaatagaactgtgttgacctgtggttctc 773
Query: 181 ggggctgggaaataaaagggaccttattcttgaatccaacatgatggctagagggaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ggggctgggaaataaaagggaccttattcttgaatccaacatgatggctagagggaatga 713
Query: 241 aagaaaccaaaaagggagctgctgacctgagagtggtgctcactctcaggaaatcacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aagaaaccaaaaagggagctgctgacctgagagtggtgctcactctcaggaaatcacatt 653
Query: 301 acttcattcctgagagcagtgctcatttgatccttatacttctcatgtgaccctacctgc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 652 acttcattcctgagagcagtgctcatttgacccttatacttctcatgtgaccctacctgc 593
Query: 361 tcctttgccctcttagcagtaattttgtagcaatgaagtacagagcaactgcgcaaccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 592 tcctttgccctcttagcagtaattttgtagcaatgaagtacagagcaactgtgcaaccac 533
Query: 421 agctggtcatggatttttattcaagctactcagggatactcttctacatcctgatagtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agctggtcatggatttttattcaagctactcagggatactcttctacatcctgatagtgt 473
Query: 481 acaaatagttgaagttcacattctctgggctgcttgttaacaggacctggggacctcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acaaatagttgaagttcacattctctgggctgcttgttaacaggacctggggacctcatt 413
Query: 541 gtcctttcattgctcttga 559
|||||||||||||||||||
Sbjct: 412 gtcctttcattgctcttga 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
