BAC Information

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BAC

Clone NameMSMg01-382H12
Chromosome11 (Build37)
Map Location 17,820,406 - 17,820,840
singlet/doubletsinglet
Overlap genenone
Upstream gene2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
Downstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382H12.T7 (MSMg01no382_h12.b1)MSMg01-382H12.TJ (MSMg01no382_h12.g1)
ACCAG486365AG486366
length745739
length of high quality
(start - end)		524 (37 - 560)491 (67 - 557)
definitionCHROMAT_FILE: MSMg01no382_h12.b1 PHD_FILE: MSMg01no382_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:13 2005CHROMAT_FILE: MSMg01no382_h12.g1 PHD_FILE: MSMg01no382_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTT
GGTTCCTTAGACACCAGGAATTCAGGTGGTGCAAGTGTACACAAGCAAAG
CCTCCATAAGCACAAATTGCAATTCACATGAGAAAAGCAAATCCTTGCCT
ACTTGTGTTTTGCTCACTTCCACACTCCTCTCTGCCTTCTTGCCCTCCCT
GCTTTGATTTCTTTTGAGCGCTAATGATTCTAATTGACTTTCAGGCTTCC
TAGTTCTCCACATGTGATGCTTGTTTGTCTCTCTGAGTCTGAGGCATGCC
ACTCCATGAAATGTTTTTCAATTCTCCCCACTTGCTTGCACAGGAAAAGA
TTTATAGCTGAATGATACTCGTGTATGTATATTGTCTTTACTTATTCACC
TGTCAACAAGCACCTGGGCTGATTTTGTATCTTGGCAACTGTGACCAGTG
CTGCACTAAACATGGGTATGCAGGTATCTCTACTGTGTGTTGGTTTTATT
CCTAGGACTGGTATCTATGGATTACACTATACTTTAATACAGCTTTTTGA
GCAACCTCTAGATGGTTTTCAGCAAGCTGTACTGGTTTACAGACCCTCCA
GTAGTGTACTGTTCCATTTATCTCAACTTTGTTTTTTCTTTCAAATTTGG
TTTTGTTTGGTTCCTCCTTAAGAAATCCTGGCCTGACTGGAAATTAAATT
TTTAAATCAAGGCGAACTTGTAATTCACAAAATAATGCCGGCCGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTATTTAACTTGTATTCCACAAATAGGGTTATT
TGTTTCTCTGGAGTCCACCTTCTTGAGTTCTTTGTATATTTTGGATATTA
ACCCTCTATCAGATGTAGATCCGGTAAAGATTTTTTCCAATCTGTGGGTT
GCCATTTTGTCCTATTAACAGTGTCCTTTCCCTTACAGAAGCTTTTCAAT
TTTGTGAGGTCTCATTTGTCAACTGTTGATCTTATAGCATAAGCCATTAG
TGTTCTGTTCAGGAATTTTCCCCTGTGCCCAAGTATTCAAAGCTCTTCTC
CACTTTCTTTTTTTATTAGATTCAGTGTATCTGGTTTTATGTGGAGTTCC
TTGATCCACTTGGACTTGAGCTTTGTAAAAGAAGAATGGATCAATTTGCA
TTCTTCTACATGTGGACCACCAGTTGAACCAGCACCATTTGCTGAAAATG
GTGTCTTTTTGACACTGGATGGTTTTTCACTTCTTTGTCAAAGATTAAGT
GAGCATAGGTGTGTGGGGTTTATTCATGGGCTTCCAATCTATTTCATTGA
TCTACCCACCCTGTTTCTGTACTAATACTAAGAAGCTTTTATCACTATTG
TTCTCTTTTAAACCTGGAGGCTCGGGAAGGAGAATATCCAAAACTTGGTT
TATTGTCGCAAATATTTTTTCTGATCCAAGGTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_h12.b1 MSMg01no382_h12.b1 CHROMAT_FILE:
MSMg01no382_h12.b1 PHD_FILE: MSMg01no382_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:13 2005
         (524 letters)



>mm_chr11_17820406_17821329
          Length = 924

 Score =  833 bits (431), Expect = 0.0
 Identities = 434/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttggttccttagacaccaggaattcaggtggtgcaagtgtacacaagcaaa 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggaattcttttggctccttagacaccaggaattcaggtggtgcaagtgtacacaagcaaa 376

                                                                       
Query: 64  gcctccataagcacaaattgcaattcacatgagaaaagcaaatccttgcctacttgtgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gcctccataagcacaaattgcaattcacatgagaaaagcaaatccttgcctacttgtgtt 316

                                                                       
Query: 124 ttgctcacttccacactcctctctgccttcttgccctccctgctttgatttcttttgagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttgctcacttccacactcctctctgccttcttgccctccctgctttgatttcttttgagc 256

                                                                       
Query: 184 gctaatgattctaattgactttcaggcttcctagttctccacatgtgatgcttgtttgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gctaatgattctaattgactttcaggcttcctagttctccacatgtgatgcttgtttgtc 196

                                                                       
Query: 244 tctctgagtctgaggcatgccactccatgaaatgtttttcaattctccccacttgcttgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctctgagtctgaggcatgccactccatgaaatgtttttcaattctccccacttgcttgc 136

                                                                       
Query: 304 acaggaaaagatttatagctgaatgatactcgtgtatgtatattgtctttacttattcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 acaggaaaagatttatagctgaatgatactcgtgtatgtatattgtctttacttattcac 76

                                                                       
Query: 364 ctgtcaacaagcacctgggctgattttgtatcttggcaactgtgaccagtgctgcactaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  ctgtcaacaagcacctgggctgattttgtatcttggcaactgtgaccagtgctgcactaa 16

                          
Query: 424 acatgggtatgcagg 438
           |||||||||||||||
Sbjct: 15  acatgggtatgcagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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