Query= MSMg01no382_j03.b1 MSMg01no382_j03.b1 CHROMAT_FILE:
MSMg01no382_j03.b1 PHD_FILE: MSMg01no382_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:21 2005
(546 letters)
>mm_chr11_44506827_44507771
Length = 945
Score = 1019 bits (527), Expect = 0.0
Identities = 536/539 (99%), Gaps = 1/539 (0%)
Strand = Plus / Minus
Query: 8 ggaattcccacattttcacacgattcaaacaaagagatccccaagatgcaatccatagtc 67
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggaattcccacattttcaca-gattcaaacaaagagatccccaagatgcaatccatagtc 687
Query: 68 ttcccattacccactggaaaactctttaagaataggaacctcaccttcacaaatgtgata 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttcccattacccactggaaaactctttaagaataggaacctcaccttcacaaatgtgata 627
Query: 128 tctacgttaatgtggacaagctggagctgtacacggagaataatgtttaaccaacatgcc 187
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctacgttaatgtagacaagctggagctgtacacggagaataatgtttaaccaacatgcc 567
Query: 188 tacagcaacctaaccttttcagagacaatgcaacttttctactgttacaattattgcttt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacagcaacctaaccttttcagagacaatgcaacttttctactgttacaattattgcttt 507
Query: 248 ctatgtacttgaaaagcgttataaaaatcaaagctaagcgaaaaagtaataataattata 307
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 506 ctatgtacttgaaaagcgttataaaaatcaaagccaagcgaaaaagtaataataattata 447
Query: 308 aaaaatcagaactcaataatctaatgccacagagaaaagtccaccaacaatctgtttcgc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaaaatcagaactcaataatctaatgccacagagaaaagtccaccaacaatctgtttcgc 387
Query: 368 ttctagtgtttggctatttccaaaagcagtccccaaacatgaagtgaggtcaaaagcatg 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttctagtgtttggctatttccaaaagcagtccccaaacatgaagtgaggtcaaaagcatg 327
Query: 428 gcacagaccaaaggacaaaactgagttcgcagtcctgagacaagctcatgtcgttcagta 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcacagaccaaaggacaaaactgagttcgcagtcctgagacaagctcatgtcgttcagta 267
Query: 488 gagtcatagtgacttttggattgcttgctttgattgattgattgctcattgtgagacag 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagtcatagtgacttttggattgcttgctttgattgattgattgctcattgtgagacag 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space: 501160
Effective search space used: 501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_j03.g1 MSMg01no382_j03.g1 CHROMAT_FILE:
MSMg01no382_j03.g1 PHD_FILE: MSMg01no382_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:21 2005
(512 letters)
>mm_chr11_44330295_44331206
Length = 912
Score = 905 bits (468), Expect = 0.0
Identities = 501/512 (97%)
Strand = Plus / Plus
Query: 1 tttattctgtgtttctggccacatattttcctgccttcgccagtagtgaaactttgagag 60
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 201 tttattctgtgtttctggccacatattttcctgccttagccagcagtgaaactttgagag 260
Query: 61 taaaagccaaggaaagctgttgctagcataggcagcttcctattgcaaccatcagccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaagccaaggaaagctgttgctagcataggcagcttcctattgcaaccatcagccagt 320
Query: 121 gcggatttttacctaggaggctacatacagaagagactcatgaaaccactgctctgtgat 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggatttttacctaggaggctacatacagaagagactcatgaaaccactgctctgtgat 380
Query: 181 gtgacaggtgtaatggctattccaaggtggcctaagggatccaaacaaaagtggttataa 240
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gtgacaggtttaatggttattccaaggtggcctaagggatccaaacaaaagtggctataa 440
Query: 241 ggagttatgaacagaatccccagaaacatttaaaccctgctatgaagctagtaggtgaca 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgagttatgaacagaacccccagaaacatttaaaccctgctatgaagctagtaggtgaca 500
Query: 301 gttaccgataatcatcaatttgacaaaattagtcacatgggaccatggctcctgaggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttaccgataatcatcaatttgacaaaattagtcacatgggaccatggctcctgaggaca 560
Query: 361 ttctcttgattagtgtgatgccattccttggatagggcatcctgcactgcttacgagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctcttgattagtgtgatgccattccttggatagggcatcctgcactgcttacgagtga 620
Query: 421 ggaacatgaggcactgagcagtgacatgcatgcattcacatcgctctctgcttctagact 480
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ggaacatgaggcagtgagcagtgacatgcatgcattcacatcactctctgcttctagact 680
Query: 481 ctgggtaaagtgaccagctgtttcaagttcct 512
|||||| |||||||||||||||||||||||||
Sbjct: 681 ctgggtgaagtgaccagctgtttcaagttcct 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
