Query= MSMg01no382_m09.b1 MSMg01no382_m09.b1 CHROMAT_FILE:
MSMg01no382_m09.b1 PHD_FILE: MSMg01no382_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:37 2005
(584 letters)
>mm_chr11_99069679_99070662
Length = 984
Score = 963 bits (498), Expect = 0.0
Identities = 546/578 (94%), Gaps = 26/578 (4%)
Strand = Plus / Plus
Query: 7 gaattcttagccctacctgctcaaaaccccaaacagacccgttgatagtaaagttctttg 66
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 216 gaattcttagccctacatgctcaaaaccccaaacagacccgttgataggaaagttctttg 275
Query: 67 ccaggatagacaaggctatacagagaaatcctgttttgaaaaaaaaaaaaaaaaaaacaa 126
||||| |||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 276 ccagggtagacaaggctacacagagaaatcctgttttgaaaaaaaaaa---------caa 326
Query: 127 caaaaaattgtttgactctcaagcaactgtagaatcacagaaaaactggcccaaggatga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caaaaaattgtttgactctcaagcaactgtagaatcacagaaaaactggcccaaggatga 386
Query: 187 ccccacacatcaggcttcctctcagggaactgctcaatgctgtgtctataccggcagtta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccccacacatcaggcttcctctcagggaactgctcaatgctgtgtctataccggcagtta 446
Query: 247 ctcaagtgtgggtgcaagtgccgtctctccatgagcacaggctctattcacttactggcc 306
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctcaagtgtgggtgcaggtgccgtctctccatgagcacaggctctattcacttactggcc 506
Query: 307 acacttcttgcacactactgagatttcttcagtcctattgatactgacagttcatgaggc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acacttcttgcacactactgagatttcttcagtcctattgatactgacagttcatgaggc 566
Query: 367 aaggttcctaaaagtgacatcttatgaccatggatcattccatgatgtccctgtatcata 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaggttcctaaaagtgacatcttatgaccatggatcattccatgatgtccctgtatcata 626
Query: 427 gtgaccaaattatgtctacattttatcttccacagtgcaataaaaactacagtgcaataa 486
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 627 gtgaccaaattatgtctacatattatcttccacagtgcaataaaaac------------- 673
Query: 487 aaacactgagacctttgtcttaatttctttattatgtttggacctttaagaaacatatac 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ----actgagacctttgtcttaatttctttattatgtttggacctttaagaaacatatac 729
Query: 547 catcatatataccactattcagtaaaaatctattctag 584
||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catcatatataccactattcagtaaaaatctattctag 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_m09.g1 MSMg01no382_m09.g1 CHROMAT_FILE:
MSMg01no382_m09.g1 PHD_FILE: MSMg01no382_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:37 2005
(531 letters)
>mm_chr11_99233658_99234587
Length = 930
Score = 973 bits (503), Expect = 0.0
Identities = 524/531 (98%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 1 atttaaacccaccccccctcccctcaaggtatgaaaacgaactcacccttcaccaaaatg 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 atttaaaccca-cccccctcccctcaaggtatgaaaacgaactcacccttcaccaaaatg 541
Query: 61 tcgaggcagacatcaatgggttgcggcgcgtccttgacgagctaaccctctgcaggacgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 540 tcgaggcagacatcaatgggttgcggcgcgtccttgacgagctaaccctctgcagaacgg 481
Query: 121 accaagagctgcagtacgaatccctgagtgaggagatgacttatctcaagaagaaccacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 accaagagctgcagtacgaatccctgagtgaggagatgacttatctcaagaagaaccacg 421
Query: 181 aagaggtaggagaagcttagctctaaccccaacacagctctgcccgggaaaagtctagcg 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 aagaggtaggagaagcttcgctctaaccccaacacagctctgcccgggaaaagtctaggg 361
Query: 241 agggaagctgttgaaatcccaggggagaaacctgagatatcaacactttgaaatccaaat 300
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggcaagctgttgaaattccaggggagaaacctgagatatcaacactttgaaatccaaat 301
Query: 301 gaaaaggccagctgctccgtgaactagtgcagaccattgctttgctcgagaacccagggt 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gaaaaggccagctgctccgtggactagtgcagaccattgctttgctcgagaacccagggt 241
Query: 361 gccaccgctggagggtgtagccactaagaacgggtggtcaggagtcgggaaccctgtcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gccaccgctggagggtgtagccactaagaacgggtggtcaggagtcgggaaccctgtcca 181
Query: 421 gtctcccttctgatcagatcccagcaagcaacttaggagagtttcttctcctctctgtat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gtctcccttctgatcagatcccagcaagcaacttaggagagtttcttctcctctctgtat 121
Query: 481 tgcagtgtcctcatctgtgaagagagtgcctacctcataaggatgctcaga 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgcagtgtcctcatctgtgaagagagtgcctacctcataaggatgctcaga 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
