BAC Information

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BAC

Clone NameMSMg01-382P04
Chromosome11 (Build37)
Map Location 102,437,862 - 102,438,310
singlet/doubletsinglet
Overlap geneLOC100040792
Upstream geneNbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1
Downstream geneFzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382P04.T7 (MSMg01no382_p04.b1)MSMg01-382P04.TJ (MSMg01no382_p04.g1)
ACCAG486731AG486732
length763894
length of high quality
(start - end)		464 (34 - 497)167 (65 - 231)
definitionCHROMAT_FILE: MSMg01no382_p04.b1 PHD_FILE: MSMg01no382_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:50 2005CHROMAT_FILE: MSMg01no382_p04.g1 PHD_FILE: MSMg01no382_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCTCT
CTGAGTCAGCGTTACTCTGGGAGCTGTCTGCTCAGTGAGGGTCAGGATGA
TTCAAATATGAGATGAGCATCCCTTGGTATCCAGGAGAGCTGTTTCCAGC
AACTCTGTGGGTATCAAAATCTTCAGGGGCTGAAATCCTTCATATCAAAA
TGACATGCTATTTGGGTACAGCCGGTGCAGATCTTCTTGGAAACGAACAG
TCCCTCCTGCCTGCAAGTGCCGTGGAGGTAACTGTTACTGTTTATGGAGC
AAAACAAGGAAAGAAAGGATGCTTAGTGCTGACACAGTCTCCAAAAAAAC
AAAAAAATAAAAAATAAAATAAATAAAAATTTAAAAAGCAGATACACACA
TTTTTCCCTCATAATATAGACCCATGGTTGGTTGAATACTTTGTAGGGGA
GTCTGAGGATAAAAGATCTGGGGCGACTGTCATATTAAGACCATGGAATT
AAGACCAGAGAACTCCTGAAGGACGCTGGTGTTGCTGTCCTAAGGTCCAC
GGTGTTCTAAAAGTCCAAATATGGTTCTGGTTATAACAGCATCTTTTATC
TCCTATTAATGTAAAAGTTTATAGCCCTTTTTCAATCCCGGTACTCCTGG
TGAGTCCTTCACATTTTATCCAACGGGTCTTTATTGTATGGTATTTTCCC
AACTTCCTCCGGTACTTTTATATGAATAATCTGTTCCTTTTATATAAATC
CTTACTTAAACTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTAGGGGGCACTGTTCTGAGCAGGGGGTGGGTCTGG
GAGACAGGGTATGGAGACCTGGGGGCCCCAAAGCAGTGGGAGCAGTGGGG
TCCTATACTGATGACCAGTGGCAGAATGAGGAAGCAAAAGAGAAAGTGTG
CGCGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGTGTGGGGGTGCGTC
GGCGCGTCGTCTCGGTGGCGTGTCGCGCGTGTTCGGCCGCTGCGGTCGTG
TTCGTNCCGTCGTTACGTTTGTTTCTCCTATGTCTCTTTATCTTCAATGA
ATCTTTCTTCTTATTTATCCCAACACGTCCTTTTTTTTTGTTTTGTTTGG
CTTTTTTCTTGTTTTGTTCCCCCCACTTTACTTTCTTTTTTTTGTTTCTT
CCTCCTCTCGCACTACTCATTTTTTTCTCTTTTATTTTCCTTCTCTTTCT
TCTCTCTTTTTTTTCTCCCTATTTTATTATCTCTCTTTTTCTCATTTTTT
CCCTTTCTTTGTCTATAGTTTTCTTTCCCCCTTCCATTATGCTCCTTTTT
TTGTCCCCCCTTCTTCTTCTTCTTTTATCATCTTTTCTTTTTCGCTTTTA
CTTTTTATCTTTATTTCTTTATTTTCAACTTACTTTTTGCATCTTTCTTT
TCTCCCTTTCTTTTTCTCCTCCCGCCTCTTTATTTTCTTGCCTATTCCTA
GTCCTCTCTTTATTTCACTACCTTTATCTATCCTATTTTCCCTTCTTCAC
TTCCTTCTTTTTCCTCTTCACCTCTTTCCAATTATTCCCTTCCACATCAT
CCTATTCTCCATCATTTCTCTTCTTCTCCAACACTTTCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_p04.b1 MSMg01no382_p04.b1 CHROMAT_FILE:
MSMg01no382_p04.b1 PHD_FILE: MSMg01no382_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:50 2005
         (464 letters)



>mm_chr11_102437658_102438521
          Length = 864

 Score =  789 bits (408), Expect = 0.0
 Identities = 443/460 (96%), Gaps = 11/460 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctctctgagtcagcgttactctgggagctgtctgctcagtgagggtcagga 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattccttctctctgagtcagcgttactctgggagctgtctgctcagtgagggtcggga 264

                                                                       
Query: 65  tgattcaaatatgagatgagcatcccttggtatccaggagagctgtttccagcaactctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgattcaaatatgagatgagcatcccttggtatccaggagagctgtttccagcaactctg 324

                                                                       
Query: 125 tgggtatcaaaatcttcaggggctgaaatccttcatatcaaaatgacatgctatttgggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 325 tgggtatcaaaatcttcaggggctgaaatccttcatatcaaaatgacgttctatttgggt 384

                                                                       
Query: 185 acagccggtgcagatcttcttggaaacgaacagtccctcctgcctgcaagtgccgtggag 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 acagccggtgcagatcttcttggaaacgaacaatccctcctgcctgcaagtgccgtggag 444

                                                                       
Query: 245 gtaactgttactgtttatggagcaaaacaaggaaagaaaggatgcttagtgctgacacag 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 gtaactgttactgtttatggagcaaaacaaggaaagaaaggttgcttagtgctgacacag 504

                                                                       
Query: 305 tctccaaaaaaacaaaaaaataaaaaataaaataaataaaaatttaaaaagcagatacac 364
           |||||| |||| |||||||||||||  |||||        ||||||||||||||||||||
Sbjct: 505 tctccagaaaa-caaaaaaataaaa--taaaa--------aatttaaaaagcagatacac 553

                                                                       
Query: 365 acatttttccctcataatatagacccatggttggttgaatactttgtaggggagtctgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acatttttccctcataatatagacccatggttggttgaatactttgtaggggagtctgag 613

                                                   
Query: 425 gataaaagatctggggcgactgtcatattaagaccatgga 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gataaaagatctggggcgactgtcatattaagaccatgga 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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