BAC Information

Click to search

BAC

Clone NameMSMg01-383I04
Chromosome11 (Build37)
Map Location 36,145,789 - 36,344,842
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383I04.T7 (MSMg01no383_i04.b1)MSMg01-383I04.TJ (MSMg01no383_i04.g1)
ACCAG487163AG487164
length728725
length of high quality
(start - end)		545 (46 - 590)537 (79 - 615)
definitionCHROMAT_FILE: MSMg01no383_i04.b1 PHD_FILE: MSMg01no383_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:34 2005CHROMAT_FILE: MSMg01no383_i04.g1 PHD_FILE: MSMg01no383_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,145,789 - 36,146,329)(36,344,306 - 36,344,842)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCATTCCTAATTACCCTGCCGTCAGTTCTACTCCTGACTTTATGGTG
ACAAAAATCAAACCGCGGGCTCAGCTGTGGCTCTGTCTAATATAATAGCT
GCCACTTGCTAATGCAGTGAGCGGAGCTTACGGGGAGGTGTGCAGGTGGT
AACACGTCCCGCTGTCCTCTCAGTCTAGGGCAGCATCCCATTCCTGATGG
ACGTCAAGCGTCAGGGTGGTTATTAATTACCAGGATGGTCAGCATGATGC
AGAGGGTCCTGGGGAGCCAGCCACATTCATAAAGTGCTCCGTTGATTGCT
CAGCGCACATCTCAGGGTCTCTTTCTAAGAACCAGTGGTAATTGCTTTTA
TTCCCTTAACATAACTGTGAGGCTTTCGTAAAACAGAGAAATATAAATAA
ACCCATCTTTATCTCCTAGATGTGATGCCAAAAATGCATATAGAAACTAA
AGTGTTGAGAGGCAGGCAATGTGTCATTCCACTAGTGTTTAACCTTCTCT
GAGCACTAAGTTTGTGCTAGATAACTATATTACATGTTGTGGGTCAGTAA
ATGTAGCTTGTCATTGTGGGTCTATATCAAAAATAATAATTTATAAAACT
AGTAACAGCAATGATGCTAATAGAATAACAGTGGGGGCGGTTGGTAAACT
ATTTTTCACTTTATAAGGGTTTCCCTTA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAATCTGCACCATGGTGA
GACTCCACCCCATATTTAGCTTATTTGCATATGACTTAAAGACAAACCTT
GTGAAACATGGGCTAGCAGTGAGGATGTGTGGTCCCTGGTGAAGTTTCTA
GCATTCCTAGTGTGGGAGCAAGTAATGCCTCTCTACGAAGTACAGCATCC
TGAAGAGAGGTGGAAGGAATTCACCCAAGAGCACAAGAACAGATCAGAAG
CACAGTAAAGTCGAAGAGAAGAGGTAAGCTGTCAGGTAGAGATCCCGTTG
CTAATGAAACATGCATCACCTTTCCAGGGAGATTTGCACTGGGACCACGT
TTTGAAGTAGATTGGCCTAAACACTTATGAAGTCCCCATGATGTCATGTC
CTTTCCTTGGATCAATACCCCTGGCTTCAGTGACATGTCACAAAGGACTA
GACAGACAAGATGCTCTTTGGAGACAAGAATTAAGATTTTAGGACAGCAC
TTGGGATGGAGAAGTGTCCTAAGGGTTTGAGTTCAGAGGTTCCTCAAGAG
CAGAGGGAAGCTTTAAACATCTGGAGCTGCGTTTCCAGAGGGAGAGGCTG
CGCCTCTGAATAGGTACACGGGAGATGAATATTATATGATCTGACACTCG
TGCCTAATGAAATGTTTATAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_i04.b1 MSMg01no383_i04.b1 CHROMAT_FILE:
MSMg01no383_i04.b1 PHD_FILE: MSMg01no383_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:34 2005
         (545 letters)



>mm_chr11_36145585_36146529
          Length = 945

 Score = 1038 bits (537), Expect = 0.0
 Identities = 540/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcctaattaccctgccgtcagttctactcctgactttatggtgacaaaaatc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcctaattactctgccgtcagttctactcctgactttatggtgacaaaaatc 264

                                                                       
Query: 65  aaaccgcgggctcagctgtggctctgtctaatataatagctgccacttgctaatgcagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaccgcgggctcagctgtggctctgtctaatataatagctgccacttgctaatgcagtg 324

                                                                       
Query: 125 agcggagcttacggggaggtgtgcaggtggtaacacgtcccgctgtcctctcagtctagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcggagcttacggggaggtgtgcaggtggtaacacgtcccgctgtcctctcagtctagg 384

                                                                       
Query: 185 gcagcatcccattcctgatggacgtcaagcgtcagggtggttattaattaccaggatggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagcatcccattcctgatggacgtcaagcgtcagggtggttattaattaccaggatggt 444

                                                                       
Query: 245 cagcatgatgcagagggtcctggggagccagccacattcataaagtgctccgttgattgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagcatgatgcagagggtcctggggagccagccacattcataaagtgctccgttgattgc 504

                                                                       
Query: 305 tcagcgcacatctcagggtctctttctaagaaccagtggtaattgcttttattcccttaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcagcgcacatctcagggtctctttctaagaaccagtggtaattgcttttattcccttaa 564

                                                                       
Query: 365 cataactgtgaggctttcgtaaaacagagaaatataaataaacccatctttatctcctag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cataactgtgaggctttcgtaaaacagagaaatataaataaacccatctttatctcctag 624

                                                                       
Query: 425 atgtgatgccaaaaatgcatatagaaactaaagtgttgagaggcaggcaatgtgtcattc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtgatgccaaaaatgcatatagaaactaaagtgttgagaggcaggcaatgtgtcattc 684

                                                                       
Query: 485 cactagtgtttaaccttctctgagcactaagtttgtgctagataactatattacatgttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cactagtgtttaaccttctctgagcactaagtttgtgctagataactatattacatgttg 744

            
Query: 545 t 545
           |
Sbjct: 745 t 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_i04.g1 MSMg01no383_i04.g1 CHROMAT_FILE:
MSMg01no383_i04.g1 PHD_FILE: MSMg01no383_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:34 2005
         (537 letters)



>mm_chr11_36344106_36345042
          Length = 937

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttaatctgcaccatggtgagactccaccccatatttagcttatttgcatatgactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tctttaatctgcaccatggtgagactccaccccatatttagcttatttgcatatgactta 678

                                                                       
Query: 61  aagacaaaccttgtgaaacatgggctagcagtgaggatgtgtggtccctggtgaagtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aagacaaaccttgtgaaacatgggctagcagtgaggatgtgtggtccctggtgaagtttc 618

                                                                       
Query: 121 tagcattcctagtgtgggagcaagtaatgcctctctacgaagtacagcatcctgaagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tagcattcctagtgtgggagcaagtaatgcctctctacgaagtacagcatcctgaagaga 558

                                                                       
Query: 181 ggtggaaggaattcacccaagagcacaagaacagatcagaagcacagtaaagtcgaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggtggaaggaattcacccaagagcacaagaacagatcagaagcacagtaaagtcgaagag 498

                                                                       
Query: 241 aagaggtaagctgtcaggtagagatcccgttgctaatgaaacatgcatcacctttccagg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagagggaagctgtcaggtagagatcccgttgctaatgaaacatgcatcacctttccagg 438

                                                                       
Query: 301 gagatttgcactgggaccacgttttgaagtagattggcctaaacacttatgaagtcccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagatttgcactgggaccacgttttgaagtagattggcctaaacacttatgaagtcccca 378

                                                                       
Query: 361 tgatgtcatgtcctttccttggatcaatacccctggcttcagtgacatgtcacaaaggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgatgtcatgtcctttccttggatcaatacccctggcttcagtgacatgtcacaaaggac 318

                                                                       
Query: 421 tagacagacaagatgctctttggagacaagaattaagattttaggacagcacttgggatg 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taaacagacaagatgctctttggagacaagaattaagattttaggacagcacttgggatg 258

                                                                    
Query: 481 gagaagtgtcctaagggtttgagttcagaggttcctcaagagcagagggaagcttta 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagaagtgtcctaagggtttgagttcagaggttcctcaagagcagagggaagcttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |