BAC Information

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BAC

Clone NameMSMg01-383L11
Chromosome11 (Build37)
Map Location 52,661,228 - 52,842,029
singlet/doubletdoublet
Overlap geneFstl4
Upstream genePhf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383L11.T7 (MSMg01no383_l11.b1)MSMg01-383L11.TJ (MSMg01no383_l11.g1)
ACCAG487321AG487322
length771739
length of high quality
(start - end)		547 (39 - 585)460 (73 - 532)
definitionCHROMAT_FILE: MSMg01no383_l11.b1 PHD_FILE: MSMg01no383_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:50 2005CHROMAT_FILE: MSMg01no383_l11.g1 PHD_FILE: MSMg01no383_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,661,228 - 52,661,770)(52,841,608 - 52,842,029)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
AACCTTAATATGCAAATTTCTACTTAGTAGAGGGTCTACTTTATTGACTT
TAGAGGGTCTACTTTATTGACTGTAGGCAGGGGACTTAAATACAGCCATT
TCTTTCCCATGCTAACTGGCTGCTACCAGTAGAGCCAGGTTTGAGGAGCC
ATAGATACAGAATCAGCTGAGAAGTCAGGAGGCAAGAAAGGGCAGTGGGT
GGGATGAAGGGTCCTCTGGGATGAGGCTGAACCATTGCCCCCTGTCCTCA
TGGAAGACCTAAATCTGCTCCAGGGCAGGGTCTAGGACGACACCTTGTTA
TTCATTTATTTATAAATATTTAAATAAATATTCATTGTACTTATGCTGGG
AGTCAAACCCACGACCTTGGGCGTGCCTTAGGAAAGTGCCCAGTTGAACT
ACAATCCCCAACTCTGGGGCCGCTCATGTAAGCTGATGGAGCCATGAGAA
GAATCGTCTTCCTGTCAGTGGGCTTTGAGGAGTGTCTGCCATGCTAAAGA
GGCAGGGGTAACTGTTGTAAGGAACTTATGCTCCTTCTCTGTTGCCGTGG
TAACAAACTGCCCCCAGCTGGGTGGGGTAAACAACACACATTTGTTGTTT
TACCTCCTAGAAATTAAAACTTGCGAACCAAGGTTTAAGGTGGCTAAAAC
CAAGGGGGCAAGCCCTCCGGGGCCCCTGGGGGGGTAAATTTGGGGGGTCT
CGAACCCCTGATAAAAACCGG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACATGGTACCCAGCCTCTTCATTC
CCTGACCTACTTTGTTCTCTGTAAGATCTCCGTGTAAGACAGGCCCCATC
TTGACTGGTGAGAGCCTGCTATATGGTATGTGTTTAGAAACCCCAGCCAG
CACCCTAGGACCATACCCTTGTGATATTTATTTTTCTGTTTCAAATCTGT
CATTGGGTCATTTGTCACCACCAGGGCTTAGATCAATTAACCTGGAAGAG
TTCCACAGTTGAGACATTTCCTGGTGGTGGCAAAACCACAGGCCAGAGTC
AGTGAGGTGGCTCAGTGGGTAAAGAGCTTGCTGCCAAACCTGATTACCTG
GCCTCCATCCCTGGGATCCACATGGTAGAGGAAGAGAAGGAACTCTCAGA
AGCTGTATTCTGGCTTACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACTGTGGTATACACATAAATAA
AAATACAATATAAATGTAAAGATATAACCCGTTATATCTCTTTATTTTAA
GAATGAATTTTCAGAATTCCGAATGGGATCAAACTCCGTAACTGAAGAGG
ACCTTGAACTTATCTTCCTGCTCTGTTTCCCTAGAGATGGGGCCATTGTG
TCTTTATATTATTGGCGGGGTTAGACGATCCGGGGGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_l11.b1 MSMg01no383_l11.b1 CHROMAT_FILE:
MSMg01no383_l11.b1 PHD_FILE: MSMg01no383_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:50 2005
         (547 letters)



>mm_chr11_52661024_52661970
          Length = 947

 Score =  980 bits (507), Expect = 0.0
 Identities = 534/543 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaaccttaatatgcaaatttctacttagtagagggtctactttattgacttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaccttaatatgcaaatttctacttagtagagggtctactttattgacttta 264

                                                                       
Query: 65  gagggtctactttattgactgtaggcaggggacttaaatacagccatttctttcccatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagggtctactttattgactgtaggcaggggacttaaatacagccatttctttcccatgc 324

                                                                       
Query: 125 taactggctgctaccagtagagccaggtttgaggagccatagatacagaatcagctgaga 184
           ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||||
Sbjct: 325 taactggctgctaccaggagagccaggtttgaggagccatagatatggaatctgctgaga 384

                                                                       
Query: 185 agtcaggaggcaagaaagggcagtgggtgggatgaagggtcctctgggatgaggctgaac 244
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 385 agtcaggaggcaagaaagggcagtgggtgggatggagggccctctgggatgaggctgaac 444

                                                                       
Query: 245 cattgccccctgtcctcatggaagacctaaatctgctccagggcagggtctaggacgaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 cattgccccctgtcctcatggaagacctaaatctgctccagggcagggtctaggatgaca 504

                                                                       
Query: 305 ccttgttattcatttatttataaatatttaaataaatattcattgtacttatgctgggag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccttgttattcatttatttataaatatttaaataaatattcattgtacttatgctgggag 564

                                                                       
Query: 365 tcaaacccacgaccttgggcgtgccttaggaaagtgcccagttgaactacaatccccaac 424
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaaacccacgaccttgggcgtgctttaggaaagtgcccagttgaactacaatccccaac 624

                                                                       
Query: 425 tctggggccgctcatgtaagctgatggagccatgagaagaatcgtcttcctgtcagtggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctggggccgctcatgtaagctgatggagccatgagaagaatcgtcttcctgtcagtggg 684

                                                                       
Query: 485 ctttgaggagtgtctgccatgctaaagaggcaggggtaactgttgtaaggaacttatgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 ctttgaggagtgtctgccatgctaaagaggcaggggtaactgttgtagggaacttatgct 744

              
Query: 545 cct 547
           |||
Sbjct: 745 cct 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_l11.g1 MSMg01no383_l11.g1 CHROMAT_FILE:
MSMg01no383_l11.g1 PHD_FILE: MSMg01no383_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:50 2005
         (460 letters)



>mm_chr11_52841559_52842418
          Length = 860

 Score =  808 bits (418), Expect = 0.0
 Identities = 421/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacatggtacccagcctcttcattccctgacctactttgttctctgtaagatctccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caggacatggtacccagcctcttcattccctgacctactttgttctctgtaagatctccg 412

                                                                       
Query: 61  tgtaagacaggccccatcttgactggtgagagcctgctatatggtatgtgtttagaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgtaagacaggccccatcttgactggtgagagcctgctatatggtatgtgtttagaaacc 352

                                                                       
Query: 121 ccagccagcaccctaggaccatacccttgtgatatttatttttctgtttcaaatctgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccagccagcaccctaggaccatacccttgtgatatttatttttctgtttcaaatctgtca 292

                                                                       
Query: 181 ttgggtcatttgtcaccaccagggcttagatcaattaacctggaagagttccacagttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttgggtcatttgtcaccaccagggcttagatcaattaacctggaagagttccacagttga 232

                                                                       
Query: 241 gacatttcctggtggtggcaaaaccacaggccagagtcagtgaggtggctcagtgggtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gacatttcctggtggtggcaaaaccacaggccagagtcagtgaggtggctcagtgggtaa 172

                                                                       
Query: 301 agagcttgctgccaaacctgattacctggcctccatccctgggatccacatggtagagga 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 171 agagcttgctgccaaacctgattacctgggctccatccctgggatccacatggtagagga 112

                                                                       
Query: 361 agagaaggaactctcagaagctgtattctggcttacacacacacacacacacacacacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 agagaaggaactctcagaagctgtattctggcttacacacacacacacacacacacacac 52

             
Query: 421 ac 422
           ||
Sbjct: 51  ac 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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