BAC Information

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BAC

Clone NameMSMg01-383M06
Chromosome11 (Build37)
Map Location 66,475,754 - 66,644,945
singlet/doubletdoublet
Overlap genenone
Upstream geneMap2k4, Zkscan6, Dnahc9, Gm879, LOC668323
Downstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383M06.T7 (MSMg01no383_m06.b1)MSMg01-383M06.TJ (MSMg01no383_m06.g1)
ACCAG487359AG487360
length773760
length of high quality
(start - end)		543 (37 - 579)541 (68 - 608)
definitionCHROMAT_FILE: MSMg01no383_m06.b1 PHD_FILE: MSMg01no383_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:54 2005CHROMAT_FILE: MSMg01no383_m06.g1 PHD_FILE: MSMg01no383_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,644,407 - 66,644,945)(66,475,754 - 66,476,294)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAA
CGTAATCTATCTTCAGCTGGCAAAATCATGCTCCCATCAGACCATGAGAC
AAATCATAGTCAGCTGCTGTGGACAATCTGAAGTAGCCCCATATCCCATA
CCTGGGATTAAAGCAAAAACATATTCACATAAAATAACTGGATTTTCAAA
GAAACCAAAATTCTCCCTACAAATCATCAGTGCATTGAAAGCCTAGAGTC
AATCTTCAGGGTGCTCATAGTCTGGGATTATAAACAGGTAGCAATTACCA
ATAACAAGAGGTGGCGTTTAATTCGTGGCTGTCATTAGCTAACCAGGATT
TAGAATATATGATGTGAGATCACACAATTCAGAGAGGAAAAAAAAACCTC
AGCATGTTTTTCTTCATATGAATCTAGCAAGTAATATAGGTACATATGTA
TATATGGAAATAAACATACACACGGATAACAGTATAACATGAAGAAAAGA
GAAGAAAGAATACNTGTAAGGTGATCCACAAGGACCAAACAGGGAGTGGA
CGTGAATTATGAAAGAGGATATAAGGTTAACTGTTTTTCCAATTCTAATT
CTGTAATGGATTTTTCATTTTGGTGGGGGGTAGATACATAAAAAATGCAT
TGAATGGTGAAAGTATAAAATCCAATGTGAATCACAGAAAAGTGTGTTCA
AGAGAACACAAAAAAAACCGGGAAAAGAAAAATTCAACCTACATGAAGGA
TCAGGGGGGGGGTGGAAGGAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGAAACTTCTAATTGCATTAGGAGACCCCCAA
ACCTAGAAAGCATTGTTCTGCCCACTCCCAACCCCTCTCCATAGTTGTGC
TATGTTACCCAGGCTGGTCCTGAACTCTAGAGCACTTGAGCTTATGAACG
CCATTTCAGACTTCCTTCTAAGCACTGGGCTTACAGATGTGTGTGAGAAC
AGACAGCTCTGCGATGCCTACCACCCTGGCTTTACTCTCCAATTCGTACA
TGTAAATCAATAGTCTCAAATCAGAACTGATTCACATAGCATCTCACAAA
GACAGTGGGAAGAGATCCCTCTCCTGCTGCCTGTACAAGAGAAAGGTGAT
GTCTCCAACACCCAGTAAGCTTAAAGAAGTGCAAGTTCTCCTTCTGGGAA
AGCTCTATTCTAGGACTGTTGCCAGGACAGAGGATTTGAGAACTGGGATA
GGGAAGAAAAGTAGCTCAATTTAACATTGAAGCACGACAGTTAAAGGTGA
ATCTGCTATAGGTACAAACCAGGAAGAAGGCAGAGGCCAGCCTGGACACT
CTGACCAGAAGACTTGGGCCAACGAAGGGACACAAAGAACTCCTGGAAGA
AAGATGGTTGGCCTGNAGTTAGGGTGTCCATACCCATTCTACAAAACATA
AGCTGGTATAAAAATGGCCCTTATGGGGCACCCTTTAAAAGTAAGCAGCC
TTATGAGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_m06.b1 MSMg01no383_m06.b1 CHROMAT_FILE:
MSMg01no383_m06.b1 PHD_FILE: MSMg01no383_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:54 2005
         (543 letters)



>mm_chr11_66644030_66644972
          Length = 943

 Score = 1021 bits (528), Expect = 0.0
 Identities = 536/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaacgtaatctatcttcagctggcaaaatcatgctcccatcagaccatgagac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gaattccaaacgtaaactatcttcagctggcaaaatcatgctcccatcagaccatgagac 857

                                                                       
Query: 65  aaatcatagtcagctgctgtggacaatctgaagtagccccatatcccatacctgggatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 aaatcatagtcagctgctgtggacaatctgaagtagccccatatcccatacctgggatta 797

                                                                       
Query: 125 aagcaaaaacatattcacataaaataactggattttcaaagaaaccaaaattctccctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aagcaaaaacatattcacataaaataactggattttcaaagaaaccaaaattctccctac 737

                                                                       
Query: 185 aaatcatcagtgcattgaaagcctagagtcaatcttcagggtgctcatagtctgggatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaatcatcagtgcattgaaagcctagagtcaatcttcagggtgctcatagtctgggatta 677

                                                                       
Query: 245 taaacaggtagcaattaccaataacaagaggtggcgtttaattcgtggctgtcattagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taaacaggtagcaattaccaataacaagaggtggcgtttaattcgtggctgtcattagct 617

                                                                       
Query: 305 aaccaggatttagaatatatgatgtgagatcacacaattcagagaggaaaaaaaaacctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaccaggatttagaatatatgatgtgagatcacacaattcagagaggaaaaaaaaacctc 557

                                                                       
Query: 365 agcatgtttttcttcatatgaatctagcaagtaatataggtacatatgtatatatggaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agcatgtttttcttcatatgaatctagcaagtaatataggtacatatgtatatatggaaa 497

                                                                       
Query: 425 taaacatacacacggataacagtataacatgaagaaaagagaagaaagaatacntgtaag 484
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 496 taaacatacacacggataacagtatatcatgaagaaaagagaagaaagaatacatgtaag 437

                                                                      
Query: 485 gtgatccacaaggaccaaacagggagtggacgtgaattatgaaagaggatataaggtta 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtgatccacaaggaccaaacagggagtggacgtgaattatgaaagaggatataaggtta 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_m06.g1 MSMg01no383_m06.g1 CHROMAT_FILE:
MSMg01no383_m06.g1 PHD_FILE: MSMg01no383_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:54 2005
         (541 letters)



>mm_chr11_66475554_66476494
          Length = 941

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaacttctaattgcattaggagacccccaaacctagaaagcattgttctgcccactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaacttctaattgcattaggagacccccaaacctagaaagcattgttctgcccactc 260

                                                                       
Query: 61  ccaacccctctccatagttgtgctatgttacccaggctggtcctgaactctagagcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaacccctctccatagttgtgctatgttacccaggctggtcctgaactctagagcactt 320

                                                                       
Query: 121 gagcttatgaacgccatttcagacttccttctaagcactgggcttacagatgtgtgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcttatgaacgccatttcagacttccttctaagcactgggcttacagatgtgtgtgag 380

                                                                       
Query: 181 aacagacagctctgcgatgcctaccaccctggctttactctccaattcgtacatgtaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagacagctctgcgatgcctaccaccctggctttactctccaattcgtacatgtaaat 440

                                                                       
Query: 241 caatagtctcaaatcagaactgattcacatagcatctcacaaagacagtgggaagagatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatagtctcaaatcagaactgattcacatagcatctcacaaagacagtgggaagagatc 500

                                                                       
Query: 301 cctctcctgctgcctgtacaagagaaaggtgatgtctccaacacccagtaagcttaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctcctgctgcctgtacaagagaaaggtgatgtctccaacacccagtaagcttaaaga 560

                                                                       
Query: 361 agtgcaagttctccttctgggaaagctctattctaggactgttgccaggacagaggattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgcaagttctccttctgggaaagctctattctaggactgttgccaggacagaggattt 620

                                                                       
Query: 421 gagaactgggatagggaagaaaagtagctcaatttaacattgaagcacgacagttaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaactgggatagggaagaaaagtagctcaatttaacattgaagcacgacagttaaagg 680

                                                                       
Query: 481 tgaatctgctataggtacaaaccaggaagaaggcagaggccagcctggacactctgacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaatctgctataggtacaaaccaggaagaaggcagaggccagcctggacactctgacca 740

            
Query: 541 g 541
           |
Sbjct: 741 g 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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