BAC Information

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BAC

Clone NameMSMg01-384A02
Chromosome11 (Build37)
Map Location 72,789,204 - 72,789,637
singlet/doubletsinglet
Overlap geneAtp2a3
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119
Downstream geneP2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384A02.T7 (MSMg01no384_a02.b1)MSMg01-384A02.TJ (MSMg01no384_a02.g1)
ACCAG487543AG487544
length730723
length of high quality
(start - end)		535 (39 - 573)525 (72 - 596)
definitionCHROMAT_FILE: MSMg01no384_a02.b1 PHD_FILE: MSMg01no384_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:12 2005CHROMAT_FILE: MSMg01no384_a02.g1 PHD_FILE: MSMg01no384_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
TGGACTGTATCTTGTGTATTCTGTATGGGTTTTTTTCTTTGGCTAATATC
CACTTATTAGTGAGTACATACCATGCATGTCCTTTTGGGTCTGAGTTACT
TCACTCAGGATGATATTTTCTAGTTCCATCCATTTGCCCGCAAAAGTCAG
GATGTCCTCATTCTTAATAGCTGAGTAGTATTCCATTGTGTAAATGAACC
ACATTTTCTGTATCCATTCTTCTGTTGTGGGACATCTAGGTTGTTTCCAT
CTTCTGGCTATCACAAATAAAGCCATTATGACAGTGGAACATGTGCTCTG
TGGCATGGTGGGGCATCTTTTGGGTATATTCCCAAGAGTGGTATAGCTGG
GTCTTTAGGTAGATAGATCTATTTCCAATTTTCTGAGGAACCACGAGATT
GATTTCCAGAGTGGTTGTACCAGTTTGCAATCCCACCAGCAATGGAGGAG
TGTTCCTCTTTCTCCACATCCTCTCCAGCATATGTTATCACCAGAGGTTG
TGATCTTAGCCATTCTGACTGGTGTAACGTGGACTCTCANGGTCGTTTTG
ATTTGCATTTCTCTGATCACTAAGGACTTTGAACATTTCTTTAGGTGTTT
CTCAGCCCTTTGAGTTTCCTCAGCTGTGAATTTCATGTTAAACTTGTCCC
CACTTTTTGATTGGGTTGGTTGGCTTTTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAATCCCTGAACACATGGACAGTGGAC
CCGGGATGTGGGATCAAGTGCCCAGGAATAAATAATTGCTGCCCTATAGT
CCTTCCTAGGTCACTGGAGCCAGCCTATCTGGTGACAGGCATCAGGTGTA
CAGACAAGCCAGAGCAGGATAGAATCTGGGTCCAATGACATGAGGGCTGC
ACTTGACTTGCTCTTGGATCCTTAAGGTAGTCACCTGGCAGGGCTCAGAT
GTAGGTTTCAGATGAGGAGACTAAGGTCCAAGACTGGAAATGACCTGCCC
TGGATACCGCAGTGACACAGAGACTCAGGGATATAGCAAGGCAAGCACTG
ATGCAGTGTTTATACACATGGAAGACCTCATCTGCTGCTCCCCACTGCCA
ACTGGGAGACGGTGCACAGGTTCTCCATCCTTTACCCCTCAAAAAGGTCA
GGCAGCCCAACATTACCTGATGGCCAGCAGGCCCCACCCACCCCAGCTGC
CACTCACCCTGCAGACAGACATCTGATTGGTGGTGAGCGTCCCCGTCTTG
TCAGAGCAGATGACCGAGGTGCAGCCCAGTGTCCCCACAGAAGGCAGGTT
CCGCCACAATGGGATTTTTACGTGCCATTCGTCTTGTGCCCAGGTCCACT
TATGTAACGTATACTGTTTGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_a02.g1 MSMg01no384_a02.g1 CHROMAT_FILE:
MSMg01no384_a02.g1 PHD_FILE: MSMg01no384_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:12 2005
         (525 letters)



>mm_chr11_72789204_72790128
          Length = 925

 Score =  832 bits (430), Expect = 0.0
 Identities = 433/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaatccctgaacacatggacagtggacccgggatgtgggatcaagtgcccaggaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cagaatccctgaacacatggacagtggacccgggatgtgggatcaagtgcccaggaataa 375

                                                                       
Query: 61  ataattgctgccctatagtccttcctaggtcactggagccagcctatctggtgacaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ataattgctgccctatagtccttcctaggtcactggagccagcctatctggtgacaggca 315

                                                                       
Query: 121 tcaggtgtacagacaagccagagcaggatagaatctgggtccaatgacatgagggctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcaggtgtacagacaagccagagcaggatagaatctgggtccaatgacatgagggctgca 255

                                                                       
Query: 181 cttgacttgctcttggatccttaaggtagtcacctggcagggctcagatgtaggtttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttgacttgctcttggatccttaaggtagtcacctggcagggctcagatgtaggtttcag 195

                                                                       
Query: 241 atgaggagactaaggtccaagactggaaatgacctgccctggataccgcagtgacacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 atgaggagactaaggtccaagactggaaatgacctgccctggataccgcagtgacacaga 135

                                                                       
Query: 301 gactcagggatatagcaaggcaagcactgatgcagtgtttatacacatggaagacctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gactcagggatatagcaaggcaagcactgatgcagtgtttatacacatggaagacctcat 75

                                                                       
Query: 361 ctgctgctccccactgccaactgggagacggtgcacaggttctccatcctttacccctca 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 74  ctgctgctccccactgccaactgggagacggagcacaggttctccatcctttacccctca 15

                         
Query: 421 aaaaggtcaggcag 434
           ||||||||||||||
Sbjct: 14  aaaaggtcaggcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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