BAC Information

Click to search

BAC

Clone NameMSMg01-384B13
Chromosome11 (Build37)
Map Location 20,915,981 - 20,916,533
singlet/doubletsinglet
Overlap genenone
Upstream geneSpred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B13.T7 (MSMg01no384_b13.b1)MSMg01-384B13.TJ (MSMg01no384_b13.g1)
ACCAG487613AG487614
length750747
length of high quality
(start - end)
549 (35 - 583)553 (63 - 615)
definitionCHROMAT_FILE: MSMg01no384_b13.b1 PHD_FILE: MSMg01no384_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:19 2005CHROMAT_FILE: MSMg01no384_b13.g1 PHD_FILE: MSMg01no384_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTTG
TTGACCAGGCTAGCCTTGAACTCAGAGATACATCTGCCTCTGCCTCCCAA
GTACTGTCATTACAGGCATGGACCACCAGTCCCAGCTTGAGAATCTCTTC
TTTGAAGAGTCCTTAGTTGGTCTCAGGTGAACTGCCGGCAACAAAGTAGC
TGTATCATTGTGAATACTCTTCAGTGACATACTAGAATTGCTTTGTACTT
TAACAGCACATGACAAAGTAAGTGTTCTTTGTAAAAGTCATTCTTATGGG
TGTGTGGCAATAACTTATTATAGGTATAGCTTGTGTTTTTCTAATGACTA
AAGATGTTGCAAGCCTTTTAGTATCCTATGGACTATCTGAATATCTCTAC
CTGTAAATTAGATGTCAAAATTGAAGATTTTAAAAATCAGATTTGTGTTT
CCTATAGTTTTGGTTTTTATTTAGATTTTTTAAAAAAAAGATTTATTTAT
TTATTTTATACAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGAT
CATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAA
TTGAACTCANGACCTCTGGAAGAGAGTCAGTGCTCTTAACTGCTGAGCCA
TCTCTCCCACCCTTATTTAACTATTTTAATTACCTGGGAATTGTTATTAT
ATTATAAAGGGAAGGGTTTTTTTAACCTTTTATTGAACCTTGGGATTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCATAGAATGAACTAAAAGGTATAAGATAAATAGATGAA
CCCCTGTTGTTTCCTTTCTCCTGTCTATTATCCCATTGCTACATTGCTTC
TGATATATATATATAATCAAGAATGACTGCTGAAGAATTTTGACTCCTTT
AGTTCAGTCCTTCTGCCCCTCCATACACACACACTTAAAATATGGTATGG
ATGTGATGATTTAGATTTCACAATCCATTCAGGAGGGGTAAGGATACAGG
GCCAGTCATCCAGTCAGGATTTCATGTTATCAAGTGGCCTTTGCACACAC
AGTTCCCTGCTCTTATCAGGGAAAAGAACCAGCTCAAAGCCCTACAGCAG
GTAACAGCCGGGACCTGTTGGCCTCAGTTCAGAACCAGAGCCTGCTTGTA
ATGGAGTTCCCAGGACAGCTTGGCAAACATGCAAGTCTGCATGACCAGAT
AACTGTGATTTTCAGAGAGGAGAGAGAGAGACAAGAGCCCACCAGACTCT
TGCAAACTGATAGCAGTCCTCAGTTGTGTGACAAGACATAGAGCATCTGC
CTCTGGGCACAGAGATGCACTGTGGGCACAGGTAGGCAAGTGCAATTCCC
TCCTACACGTGTCAGTGAGACTTGGAGTTATCAAGGGCTTCTTGTTATTT
TTCTAAGAACTGCTGCCAAGAATCTTAAACTCTGTTGCCTCCTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b13.g1 MSMg01no384_b13.g1 CHROMAT_FILE:
MSMg01no384_b13.g1 PHD_FILE: MSMg01no384_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:19 2005
         (553 letters)



>mm_chr11_20915781_20916733
          Length = 953

 Score = 1007 bits (521), Expect = 0.0
 Identities = 545/553 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagaatgaactaaaaggtataagataaatagatgaacccctgttgtttcctttctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagaatgaactaaaaggtataagataaatagatgaacccctgttgtttcctttctcct 260

                                                                       
Query: 61  gtctattatcccattgctacattgcttctgatatatatatataatcaagaatgactgctg 120
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct: 261 gtctattatcccattgctacatttcttctgatatatatataaaatcaagaatgactgttg 320

                                                                       
Query: 121 aagaattttgactcctttagttcagtccttctgcccctccatacacacacacttaaaata 180
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 321 aagaattttgactcctttagttcagtccttcagcctctccatacacacacacttaaaata 380

                                                                       
Query: 181 tggtatggatgtgatgatttagatttcacaatccattcaggaggggtaaggatacagggc 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tggtatggatgtgatgatttagatttcacaatccattcaggaggggaaaggatacagggc 440

                                                                       
Query: 241 cagtcatccagtcaggatttcatgttatcaagtggcctttgcacacacagttccctgctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtcatccagtcaggatttcatgttatcaagtggcctttgcacacacagttccctgctc 500

                                                                       
Query: 301 ttatcagggaaaagaaccagctcaaagccctacagcaggtaacagccgggacctgttggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatcagggaaaagaaccagctcaaagccctacagcaggtaacagccgggacctgttggc 560

                                                                       
Query: 361 ctcagttcagaaccagagcctgcttgtaatggagttcccaggacagcttggcaaacatgc 420
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ctcagttcagaaccatagcctgcttgtaatggagttcccaggacagcttggcaaacgtgc 620

                                                                       
Query: 421 aagtctgcatgaccagataactgtgattttcagagaggagagagagagacaagagcccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtctgcatgaccagataactgtgattttcagagaggagagagagagacaagagcccac 680

                                                                       
Query: 481 cagactcttgcaaactgatagcagtcctcagttgtgtgacaagacatagagcatctgcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagactcttgcaaactgatagcagtcctcagttgtgtgacaagacatagagcatctgcct 740

                        
Query: 541 ctgggcacagaga 553
           |||||||||||||
Sbjct: 741 ctgggcacagaga 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)