Query= MSMg01no384_l06.b1 MSMg01no384_l06.b1 CHROMAT_FILE:
MSMg01no384_l06.b1 PHD_FILE: MSMg01no384_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:03 2005
(471 letters)
>mm_chr11_4288268_4289138
Length = 871
Score = 859 bits (444), Expect = 0.0
Identities = 460/468 (98%), Gaps = 7/468 (1%)
Strand = Plus / Plus
Query: 5 gaattcccagaaatttgcgaaccactggccatagcatcaaatgacatgagaccccacttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccagaaatttgcgaaccactggccatagcatcaaatgacatgagaccccacttc 264
Query: 65 aaacaaagcagaagaggggactgatatccagtattgtccttgacctgtacaaaagtgtca 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 aaacaaagcagaagaggggactgatatccagtattgtacttgacctgtacaaaagtgtca 324
Query: 125 tggtacacacacacactcacacacacacacacacacacacacacacacacacacacacac 184
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtacacacacacact-a-----acacacacacacacacacacacacacacacacacac 378
Query: 185 acacattaaagaataaaaggcactgggaaaaaagttgcacttagctagggaaatggcatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acacattaaagaataaaaggcactgggaaaaaagttgcacttagctagggaaatggcatg 438
Query: 245 gctacagagtaaagtaggaagtgtaatagtggttgtacttt-aacattaaccagtatact 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 439 gctacagagtaaagtaggaagtgtaatagtggttgtacttttaacattaaccagtatact 498
Query: 304 atatataaaacaatagtacaaaaagaggaagaatactggatctgtataagggtgacatcg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atatataaaacaatagtacaaaaagaggaagaatactggatctgtataagggtgacatcg 558
Query: 364 aaataccacactggaattgtggtataaactagtatgtgcttgaaacggacactaatcaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaataccacactggaattgtggtataaactagtatgtgcttgaaacggacactaatcaat 618
Query: 424 tggtgtatacacacacatatgtatgtgtgtactttatatattttctgt 471
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tggtgtatacacacacatatgtatgtgtgtactttatatattttctgt 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_l06.g1 MSMg01no384_l06.g1 CHROMAT_FILE:
MSMg01no384_l06.g1 PHD_FILE: MSMg01no384_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:03 2005
(519 letters)
>mm_chr11_4440338_4441256
Length = 919
Score = 880 bits (455), Expect = 0.0
Identities = 458/459 (99%)
Strand = Plus / Minus
Query: 1 tctagaaaagtagtaagcatttctaaccactgagccatctctccagctaccattctggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tctagaaaagtagtaagcatttctaaccactgagccatctctccagctaccattctggag 400
Query: 61 attttaaaactgaaactggattcttaattttgcattttcttagatagctatttatatgaa 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 attttaaaactgaaactgaattcttaattttgcattttcttagatagctatttatatgaa 340
Query: 121 atttaagatctcattactagatttaatagtacggctgtgataatgtgttaatagtacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atttaagatctcattactagatttaatagtacggctgtgataatgtgttaatagtacaca 280
Query: 181 tgtgtgcatgtgtgtattttgaaacaagagtgtgacctgagacttgctgtgtaacagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgtgtgcatgtgtgtattttgaaacaagagtgtgacctgagacttgctgtgtaacagagg 220
Query: 241 tgtccatgaactcttgatcctcctgggattacagacttgtaccatcagcaagtttggagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tgtccatgaactcttgatcctcctgggattacagacttgtaccatcagcaagtttggagg 160
Query: 301 accaaactcagggcttcttgcatgctaggaaagcactctgccaactaagccacataccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 accaaactcagggcttcttgcatgctaggaaagcactctgccaactaagccacataccca 100
Query: 361 gctatttattttatttatttttagagacaggatctcaactatgtagccctggctgtcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gctatttattttatttatttttagagacaggatctcaactatgtagccctggctgtcctt 40
Query: 421 gaattcccagagatcttcctgtctctgctgagattaaat 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 gaattcccagagatcttcctgtctctgctgagattaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
