Query= MSMg01no384_l10.b1 MSMg01no384_l10.b1 CHROMAT_FILE:
MSMg01no384_l10.b1 PHD_FILE: MSMg01no384_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:04 2005
(517 letters)
>mm_chr11_49109828_49110744
Length = 917
Score = 864 bits (447), Expect = 0.0
Identities = 505/543 (93%), Gaps = 30/543 (5%)
Strand = Plus / Plus
Query: 5 gaattctctctccctgagcagttgaagctaatagtagttcgtcaataagt---------- 54
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattctccctccctgagcagttgaagctaatagtagttcgtcaataagtacacacacac 234
Query: 55 --acacacacacacacacacacacacaaacacacacacacacaaacacagacacacacaa 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 acacacacacacacacacacacacacaaacacacacacacacaaacacagacacacacaa 294
Query: 113 acacacacatatacacaaacacacacacaaacacacacagac------------------ 154
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 acacacacatatacacaaacacacacacaaacacacacagacacacaaacacacacatat 354
Query: 155 acacaaacacacacacaaacacacacacatatacacaaacacacacacaccacatacatt 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acacaaacacacacacaaacacacacacatatacacaaacacacacacaccacatacatt 414
Query: 215 gttagaaggtaatttgatactcacatcatattatttaagaaaatgatagcagcagctttt 274
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 415 gttagaaggtaatttgatactcacatcatattatttaagaaaatgatagcagcatctttt 474
Query: 275 ctctcttttttctacccaagcttatttaatgagtttatgtaaatcttttctttggcagat 334
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctctcttttttctatccaagcttatttaatgagtttatgtaaatcttttctttggcagat 534
Query: 335 gtgtgtctatccattctttttgtttttcctttttaaaaattagatattttctttatttac 394
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 535 gtgtgtctatccattctttttgtttttccttttttaaaattggatattttctttatttac 594
Query: 395 atttcaaatgttatcccctttcacactttcccctctgaaaaaaccctatcttctcccccc 454
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 595 atttcaaatgttatcccctttcacactttcccctctgaaaataccctgtcttctcccccc 654
Query: 455 tccccctgttccccaacacacccactcctgcttcatagcagagacattcccctatactgg 514
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttcccctgttccccaacacacccactcctgcttcatagcagagacattcccctatactgg 714
Query: 515 ggc 517
|||
Sbjct: 715 ggc 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 137
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_l10.g1 MSMg01no384_l10.g1 CHROMAT_FILE:
MSMg01no384_l10.g1 PHD_FILE: MSMg01no384_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:04 2005
(580 letters)
>mm_chr11_49294206_49295185
Length = 980
Score = 584 bits (302), Expect = e-171
Identities = 317/324 (97%), Gaps = 4/324 (1%)
Strand = Plus / Minus
Query: 1 ttgtagcattgagtcagccgggtccaaatgtgttgtccattaacgccaattttgggatct 60
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 ttgtagcattgagttagccgggtccaaatgagttgtccattaacgccaattttgggatct 261
Query: 61 caccattcaaaggcaaaatattcctggcttttgggagccatgggtaggctgaagaaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caccattcaaaggcaaaatattcctggcttttgggagccatgggtaggctgaagaaggca 201
Query: 121 tcttttatctttctttatttcttctctgaccaagttattattgaatagatagtatttagc 180
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tctttta----tctttatttcttctctgaccaagttattattgaatagatagtatttagc 145
Query: 181 ttctacgtttatgagggcctacttttgtttttattgctattgaagaccagacttaatctg 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttctacgtttatgagggcctactgttgtttttattgctattgaagaccagacttaatctg 85
Query: 241 tggtggtcttatataatgcatggggtttattcaatgttcttgtatctgttgaggtttgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tggtggtcttatataatgcatggggtttattcaatgttcttgtatctgttgaggtttgtt 25
Query: 301 ttgtgtccaagtcaatttttgaga 324
||||||||||||||||||||||||
Sbjct: 24 ttgtgtccaagtcaatttttgaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
