BAC Information

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BAC

Clone NameMSMg01-385A23
Chromosome11 (Build37)
Map Location 91,182,065 - 91,182,416
singlet/doubletsinglet
Overlap genenone
Upstream geneHlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385A23.T7 (MSMg01no385_a23.b1)MSMg01-385A23.TJ (MSMg01no385_a23.g1)
ACCAG488349AG488350
length748751
length of high quality
(start - end)		583 (26 - 608)466 (64 - 529)
definitionCHROMAT_FILE: MSMg01no385_a23.b1 PHD_FILE: MSMg01no385_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:31 2005CHROMAT_FILE: MSMg01no385_a23.g1 PHD_FILE: MSMg01no385_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATATTGAGAGGATCCGCGGAATTCTTTCTTTC
ACCTCTTGATGCAGAAACAAACATGTCTTCATTTCTCTTCTATTGCTGCG
ATAAAGCTCTCTGATGAAAGCGGTTTGAAAGAGAAAGTTTAGTTTAGGCT
TATGGCTTGAGAAGGACAAACAACAGGTGGTGATAGTACGGTGGCAGAAG
CAGCACACTGACTGGTCACACAGCAACCACACAGGAAGCAGAGAGTGAGC
AGGAAGTGAGGTCAGCCAATAATGCCTCAAGGGCAGCCCTCAGCTACACA
CATCATCCAGCAATCTCCTCATTCAACACCACCAGTTGAGGACCAAGTAT
TTAAGCACATAAACCTATGGGGGGGGGGCATTTCCCACTCAAACCATATC
AAACCATCTTAGCACTCATTAGAAATGAGCTTGCCTGACCCAAAGTTCAC
TTGAATTATTTTTTTAAAGTGAGTGGTTGTCATGGTTGAATATGCTTGGC
GAAGGGAGTGGCACTATTAGAGGTGTGGCCTTGTTGGAATAGATATGTCA
CTGTAGGTGTGGGCTTTAAGTCCGTATCCTAACTGTCTGAAAGTTAGTAT
TTTGCTAGCAGCTTTCAGATGAAGATGTAGAACTCCCAGCTCCTCCTATA
CCATGTCTGCCTGAATGTTGCCATGTTCCCTCCCTGATGAAACTGGACTG
AACTTCTTATCCTGTAGCCGGCCCCAAAAAATGTTGCCCTATTAACCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCACACCAAGTTTCTGTATCACAGACATGTATATGT
GTGAGTGTGAGCATGGCATATGTATATGTGTGAGTGTGAGCATGGCATAT
GTATATGTGTGAATGTGAGCATTGCATATGTATATGTGTGAGTGTGAGCA
TGGCATATGTATATGTGTGAGTGTGAGCATGGCATATGTATATGTGTGAG
TGTGAGCATGGCATATGTATATGTGTGAATGTGAGCATTGCATATGTGCA
CTTGGCAGGGGAGAGGGGAGATGCACATGCGGAGGATGACAGCCAGTGCC
ATTGATCTCTAGATGACTTAATGTAGGAAAGTTTTTAATTGACAACAGTA
CTTATATAATAATGTTTTTTCTATTTTATGTTTCCTATTTCTATTCTCAT
AATCATATCATAAACTTCTTTCAAATAACTGTACTGAAATTATTTAGCAT
GCCCAGGAGGGAGGAGAATATTGAAAACCAGCGCAGTTTAATAGTGTGGA
CACTCTTCCCTCGAGCCCGTATGACCCCATAACCCCCAAAATAAACCTAA
GACTTACCCCGGGTCATTGCCGNCAGATTCTACTATACTGGTGATTTCCC
CGAAAGTTTAGCGCCGTCTTTTTCCTTATCCACCTAAATGTCTCTTTGTC
TTTTTTAACAACCTCTCTCTTTTCTGTGTCCCCCTCCCCTTTTCAACTTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_a23.g1 MSMg01no385_a23.g1 CHROMAT_FILE:
MSMg01no385_a23.g1 PHD_FILE: MSMg01no385_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:31 2005
         (466 letters)



>mm_chr11_91181652_91182517
          Length = 866

 Score =  627 bits (324), Expect = 0.0
 Identities = 345/352 (98%)
 Strand = Plus / Minus

                                                                       
Query: 115 atgtatatgtgtgagtgtgagcatggcatatgtatatgtgtgagtgtgagcatggcatat 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 atgtatatgtgtgagtgtgagcatggcatatgtatatgtgtgagtgtgagcatggcatat 706

                                                                       
Query: 175 gtatatgtgtgagtgtgagcatggcatatgtatatgtgtgaatgtgagcattgcatatgt 234
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 705 gtatatgtgtgagtgtgagcatggcatgtgtatatgtgtgaatgtgagcatggcatatgt 646

                                                                       
Query: 235 gcacttggcaggggagaggggagatgcacatgcggaggatgacagccagtgccattgatc 294
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 645 gcacttggcaggggagaggggagatgcacatgcggaggatgacagctagtgccattgatc 586

                                                                       
Query: 295 tctagatgacttaatgtaggaaagtttttaattgacaacagtacttatataataatgttt 354
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctatatgacttaatgtaggaaagtttttaattgacaacagtacttatataataatgttt 526

                                                                       
Query: 355 tttctattttatgtttcctatttctattctcataatcatatcataaacttctttcaaata 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tttctattttatgtttcctatttctattctcataatcatatcataaacttctttcaaata 466

                                                               
Query: 415 actgtactgaaattatttagcatgcccaggagggaggagaatattgaaaacc 466
           || ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 465 accgtactgaaattatttagcatgcctaggagggcggagaatattgaaaacc 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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