Query= MSMg01no386_a11.b1 MSMg01no386_a11.b1 CHROMAT_FILE:
MSMg01no386_a11.b1 PHD_FILE: MSMg01no386_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:45 2005
(486 letters)
>mm_chr11_100797085_100797970
Length = 886
Score = 824 bits (426), Expect = 0.0
Identities = 479/514 (93%), Gaps = 28/514 (5%)
Strand = Plus / Plus
Query: 1 gcttcaaactcactttttttttttttttt----------ggcctcagttcttggctagcc 50
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 173 gcttcaaactcacttttttttttttttttttttttttttggcctcagttcttggctagcc 232
Query: 51 acatgctaaaactgcagacatgaaacatccatggccagcttctgcttagtgttttgttcc 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 acatgctaaaactgcagacatgaaacatccatggccagcttctgcttagtgttttgttcc 292
Query: 111 tgttcatcttaagccagggtcttagctggcctggaactcaatttgtagaccagctggccc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgttcatcttaagccagggtcttagctggcctggaactcaatttgtagaccagctggccc 352
Query: 171 ttaattcttagagatccactgctgctgccttccaagtgctggaattaagggcatgtgccg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttaattcttagagatccactgctgctgccttccaagtgctggaattaagggcatgtgccg 412
Query: 231 ccagcaccattcatccttctatcatgtgtgcatgcatatgtgtgtgtgtgtgtgtgtgtg 290
|||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||
Sbjct: 413 ccagcaccattcatccgtctagcatgtgtgcatgcgtgtgtgtgtgtgtgtgtgtgtgtg 472
Query: 291 t------------------tagctgaataaagttatagcaaacataacataaaaaaatga 332
| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtatgtgtgtgtgtatgttagctgaataaagttatagcaaacataacataaaaaaatga 532
Query: 333 gaaccatagtacaaactcattcttccaaatgttactcctttaaacaaattatttccaaga 392
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaaccatagtagaaattcattcttccaaatgttactcctttaaacaaattatttccaaga 592
Query: 393 atttgccaccaaatacaatctggtaatcccaactatctgcaccagagcaagccaaacatt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atttgccaccaaatacaatctggtaatcccaactatctgcaccagagcaagccaaacatt 652
Query: 453 cttttcaccatcaaagacggcaagccaatgccat 486
|||||||||||||||||| |||||||||||||||
Sbjct: 653 cttttcaccatcaaagacagcaagccaatgccat 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_a11.g1 MSMg01no386_a11.g1 CHROMAT_FILE:
MSMg01no386_a11.g1 PHD_FILE: MSMg01no386_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:45 2005
(530 letters)
>mm_chr11_100975135_100976064
Length = 930
Score = 901 bits (466), Expect = 0.0
Identities = 518/544 (95%), Gaps = 17/544 (3%)
Strand = Plus / Minus
Query: 1 ttgggaatatatgagaaaactgacatatgactgatagaagccgacattggatggcttttc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 853 ttgggaatatatgagaaaactgacatatgactgatagaagctgacattggatggcttttc 794
Query: 61 taggaagtagtagtttggcagcatttgctaagctaaatgatcagcacctcttctggggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 taggaagtagtagtttggcagcatttgctaagctaaatgatcagcacctcttctggggac 734
Query: 121 agaggggacagggagggactggtgatggggatacagttattgaggttgatgagactggag 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agaggggacaaggagggactggtgatggggatacagttattgaggttgatgagactggag 674
Query: 181 gttagataatggtgacagctgcgcaactctgaatatactccaaaccattgaattaggtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gttagataatggtgacagctgcgcaactctgaatatactccaaaccattgaattaggtat 614
Query: 241 tccatatgttgaatcttatggtagtgttgttataaaaaataatgaatgcgtcatgttcta 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tccatagggtgaatcttatggtagtgttgttataaaaaataatgaatgcgtcatgttcta 554
Query: 301 cttatttaattacaggtaaggtcagaggtttgtgtttcgtgttgtgcagtgcagctcctt 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 553 cttatttaattacaggtaaggtcagaggtttgtgtttcgtgttgtgtagtgcagctcctt 494
Query: 361 tttcttattttctttttaatttagcattcttgtgtgtgtgtacatatca----------- 409
|||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct: 493 tttcttattttctttttaatttagtattcttgtgtgtgtgtacgtgt--gtgtgtgtgtg 436
Query: 410 --tgtgtgtgtgtgtgtgtgtgtgtgtgtaggcaggcaggcaccagccctggtgtgtttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggcaggcaggcaccagccctggtgtgtttg 376
Query: 468 tgcaggtcagaggaccgttttggagagttaatttactctttctgctggt-gtttcctggg 526
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 375 tgcaggtcagaggaccattttggagagttaatttactctttctgctg-tcgtttcctggg 317
Query: 527 atcc 530
||||
Sbjct: 316 atcc 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
