Query= MSMg01no386_e01.b1 MSMg01no386_e01.b1 CHROMAT_FILE:
MSMg01no386_e01.b1 PHD_FILE: MSMg01no386_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:02 2005
(612 letters)
>mm_chr11_24943031_24944043
Length = 1013
Score = 1143 bits (591), Expect = 0.0
Identities = 603/607 (99%), Gaps = 1/607 (0%)
Strand = Plus / Plus
Query: 7 gaattcctaaat-ttcgtataatgaagctgtacactacatttcataatgcaatagaattt 65
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcctaaatatttgtataatgaagctgtacactacatttcataatgcaatagaattt 266
Query: 66 gtccttgttatcttgatcagagagagaaaaacactatttctgctctcccaagcttggctc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtccttgttatcttgatcagagagagaaaaacactatttctgctctcccaagcttggctc 326
Query: 126 cccttagctgtctatatctttctttcccctctttctgatattggccctttctgctcccaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cccttagctgtctatatctttctttcccctctttctgatattggccctttctgctcccaa 386
Query: 186 gcttgcctttatctccttgattcgggggttccttgtttcttgtttcaggatgtgcttgtg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcttgcctttatctccttgattcgggggttccttgtttcttgtttcaggatgtgcttgtg 446
Query: 246 cactgatgtttcttctgtgatctgaatgcgttctctaattcagtctcttccaccacaggc 305
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 cactgatgtttcttctgtgatctgaatgcgtcctctaattcagtctcttccaccacaggc 506
Query: 306 ctggaaggaaagtgagaccgattaggtgcttcatctcagcctggttcactatgtaccctg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctggaaggaaagtgagaccgattaggtgcttcatctcagcctggttcactatgtaccctg 566
Query: 366 ctctgattagatgactgtggtgggaccacaccgtgtccctctagctccatacaacaccac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctctgattagatgactgtggtgggaccacaccgtgtccctctagctccatacaacaccac 626
Query: 426 tgtctctaggtcacagactcctgcctagtcctcaaagcttttgaaatacaaatggcagtt 485
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgtctctaggtcatagactcctgcctagtcctcaaagcttttgaaatacaaatggcagtt 686
Query: 486 ctgtttgctattggtgagaccaaggctggtcccatctgaggcactgtgaagtcattaaaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctgtttgctattggtgagaccaaggctggtcccatctgaggcactgtgaagtcattaaaa 746
Query: 546 ttcttcagtcagatctttgtatgtgcaatcaatgtatagattccttctgacatagactga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttcttcagtcagatctttgtatgtgcaatcaatgtatagattccttctgacatagactga 806
Query: 606 cgtttta 612
|||||||
Sbjct: 807 cgtttta 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_e01.g1 MSMg01no386_e01.g1 CHROMAT_FILE:
MSMg01no386_e01.g1 PHD_FILE: MSMg01no386_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:02 2005
(551 letters)
>mm_chr11_25068446_25069397
Length = 952
Score = 1044 bits (540), Expect = 0.0
Identities = 549/552 (99%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 1 actcccaataataggtttttggtgtgtctatataagagaattataatacgtcttgagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 actcccaataataggtttttggtgtgtctatataagagaattataatacgtcttgagggc 693
Query: 61 aaatcagcctgggtgattttggctttgtcaaaaagataaatgatagacatttcacaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aaatcagcctgggtgattttggctttgtcaaaaagataaatgatagacatttcacaggac 633
Query: 121 cataagtgttagtctgctttttagaatcaagttg-aaaaaaaaaaaaaaggaaaaagtga 179
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 632 cataagtgttagtctgctttttagaatcaagtagaaaaaaaaaaaaaaaggaaaaagtga 573
Query: 180 tgggcattttggggagaattcaaagaagaataagacacacatctaggaagagaactttac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgggcattttggggagaattcaaagaagaataagacacacatctaggaagagaactttac 513
Query: 240 aatctacggtgagagtcaaaacagaagcatatgaggatgcaaatggcaaggctgaatttg 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aatctacggggagagtcaaaacagaagcatatgaggatgcaaatggcaaggctgaatttg 453
Query: 300 aataactgtaccagtgcaacagaagaacattaccagacaggtcattctccagtgccaagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aataactgtaccagtgcaacagaagaacattaccagacaggtcattctccagtgccaagc 393
Query: 360 aaatgggaaaataataaatgctacagaagttcagagcaaggaaaagattctctcttcctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaatgggaaaataataaatgctacagaagttcagagcaaggaaaagattctctcttcctg 333
Query: 420 gatgttcagaaaaggacaaaagcataggggctcaggagaacactgggcccaactctccac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gatgttcagaaaaggacaaaagcataggggctcaggagaacactgggcccaactctccac 273
Query: 480 agaatgggtgaaatttccatagctggaagaaagaggggagggtagaatgaaattgtgcct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agaatgggtgaaatttccatagctggaagaaagaggggagggtagaatgaaattgtgcct 213
Query: 540 gtgaggaagtag 551
||||||||||||
Sbjct: 212 gtgaggaagtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space: 509622
Effective search space used: 509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
