Query= MSMg01no386_e14.b1 MSMg01no386_e14.b1 CHROMAT_FILE:
MSMg01no386_e14.b1 PHD_FILE: MSMg01no386_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:04 2005
(586 letters)
>mm_chr11_51140741_51141726
Length = 986
Score = 973 bits (503), Expect = 0.0
Identities = 549/565 (97%), Gaps = 2/565 (0%)
Strand = Plus / Minus
Query: 1 cagagtaagattctgtctcatccccctctccaaatttcactttagttttgtgcagtatgt 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 cagagtaagattctgtctcacccccctctccaaatttcactttagttttgtgcaatatgt 506
Query: 61 ccctctcttgatatttagtaagcacagcaagccacagtccctagacatccccgtgacaac 120
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 505 ccctctcttgatatttagtaagcacagcaagtcgcagtccctagacatccccgtgacaac 446
Query: 121 aaggggcgtgctggatggcctaggttgctaactaagtccttgatagcccagacttctcca 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggggcgtgctagatggcctaggttgctaactaagtccttgatagcccagacttctcca 386
Query: 181 tgtttgccatttctggcatttcttctgttcatcttactgttaaccatgctttcaaggtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtttgccatttctggcatttcttctgttcatcttactgttaaccatgctttcaaggtag 326
Query: 241 tgttgagtactctgtaaatagatgcatcataggaaaatggcacccttagattttcgtcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 tgttgagtactctgtaaatagatgcatcataggaaaatggcacccttagattttcttcta 266
Query: 301 tgggggctcatatcatatttttctccattctcctcttatgcatctagttttccttattct 360
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ggggggcgcatatcatatttttctccattctcctcttatgtgtctagttttccttattct 206
Query: 361 gtgatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcg--cctatagtgc 418
||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 205 gtgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctatagtgc 146
Query: 419 tggacattcctaggcccccgacatgctgacaagcactttacaacagggctgtatccccag 478
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tggacattcctaggcccccaacatgctgacaagcactttacaacagggctgtatccccag 86
Query: 479 ctcttttaaatttgttctgttgtttaaagatctcataaagctgccctggctacctttgca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 ctcttttaaatttgttctgttgtttaaagatctcataaagctgccctggctacctttgca 26
Query: 539 ctctctcggtagcccaagctggcct 563
|||||||||||||||||||||||||
Sbjct: 25 ctctctcggtagcccaagctggcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_e14.g1 MSMg01no386_e14.g1 CHROMAT_FILE:
MSMg01no386_e14.g1 PHD_FILE: MSMg01no386_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:04 2005
(244 letters)
>mm_chr11_51003475_51004118
Length = 644
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%), Gaps = 2/245 (0%)
Strand = Plus / Plus
Query: 1 aacattggaactcgtggagagctgcatggcgacctccacggtgctgagctgaagaagcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacattggaactcgtggagagctgcatggcgacctccacggtgctgagctgaagaagcga 260
Query: 61 gatttggctctt-gcgcagcagctcctgggtaccttcctctgagcaaagtcttccagttg 119
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttggctctttg-gcagcagctcctgggtaccttcctctgagcaaagtcttccagttg 319
Query: 120 ccttgtttttcaaatagtacctgaaagaaccagaaacccatcagatgtcagctgcacagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccttgtttttcaaatagtacctgaaagaaccagaaacccatcagatgtcagctgcacagc 379
Query: 180 aagcctgtgggtctccttgaggaaaattgctagttcttgtggtggggtagggtggagttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagcctgtgggtctccttgaggaaaattgctagttcttgtggtggggtagggtggagttg 439
Query: 240 ggaga 244
|||||
Sbjct: 440 ggaga 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
