BAC Information

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BAC

Clone NameMSMg01-387D09
Chromosome11 (Build37)
Map Location 80,201,028 - 80,201,440
singlet/doubletsinglet
Overlap geneZfp207
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik
Downstream geneLOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387D09.T7 (MSMg01no387_d09.b1)MSMg01-387D09.TJ (MSMg01no387_d09.g1)
ACCAG489997AG489998
length771770
length of high quality
(start - end)
355 (43 - 397)412 (81 - 492)
definitionCHROMAT_FILE: MSMg01no387_d09.b1 PHD_FILE: MSMg01no387_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:12 2005CHROMAT_FILE: MSMg01no387_d09.g1 PHD_FILE: MSMg01no387_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTTGTACCTAGAGTTGTTCAAATAATCCCTTCTTCTATTCAGTGTCA
CTGTGGTCTGTGCTGAGAGCCCCCTTGTGTTCCTAGTCCTGGCAATAATG
TCTCTCCATTTCTGTCTCTTAAGCTAGAAGCTTGTCAGTTTTATTCATTT
TCTGAAAGAATCATCATTTTGTTACCTTGATTTCCAAACACGTTCATTTC
TTACTTTTTTTTTTAAAGATTTATTTATTTATTTATTGTAAGTACACTGT
AGCTGTCCTCAGACACTCCAGAATAGGGAGTCAGATCTCGTTACGGATGG
TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTCACAAG
AGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCATTTCTT
ACTTTTATTGTTCTCCTTTGGCTCCCTACTCCACGAAACTTGTTAAAGGT
TACCATTGCCACCCCCGTTGCCATGGCCTGCTCTAACCCATTCCTCCCCG
AGATCACCTACACCCTCCTGGTGTTCCCCCCCTTTCCCTTGACTTGCTTG
AATTCCCCCCATGCCTCCGACCCTCCTGCTTTGTTCCCTCCCATTTACCT
TCTCTTACCCCCTCCCTCCTCCTCCTTCTCCATTACTTCATCCTCCCCTA
TCTCTCCATTTTTCCCTCCCTTTCTTCAACCGCTTTCTCCCCCCTTCCCT
TCCTTACCCCCTCCCCCCCTT
NNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTTTCTTTTCACTTGTT
CTATTGCTACAAAGCAAGAGCTTTGGCCCAGTTTTCACTGTTTTGAGACA
GGATTTCTCTGTAGTCCTCACTCCTCTGCAACTCACTGCTGATACCAGGC
TGGCCTTAGATTCAGAGATCTGCCTGTTTCTGCCTCCGAGTGCTGAGATT
AAAGTCAAGTGCAAACACTGCCTAGAAGAAAGTTTCTGACCCATCAGTCA
CCATGAGTAGTCTGCTGAGTAGTTTCTATGTTTAAAAAAAAATTTTATTT
TAAAGGTGCATAAAGAAACCTTAGATGCAGTACCAAATGCAATACCTGGG
AGAACAGACATAGAGTTGGAAATATATGGCATGGAAGGTATTCCAGAGAA
AGATATGGATGANAGACGGCGACTTCTTGAACAGAAAACACAAGGTAAGA
TTTACATGTGTATTAAAATACATTTTCACCTTGAGAGTATTGCCATTTTG
AGACTTAATTGAACATAGGTTTGCTGGCTTGCACCTTTATACCTGCTGAA
TCCTCTTCCCTGCCGATTAGATGCGATAACACTTTTGTTCCCTGGTACTG
GAACCCCCAATTGTAATAATGTCTATAATCCTTTTTCTCTTTTTCTTAAG
ACAAACCTTTAATACCACCCACCCCCGTTCTTCTTCTCCTTCTCACCATT
TTATTTTAATTTCTATCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_d09.g1 MSMg01no387_d09.g1 CHROMAT_FILE:
MSMg01no387_d09.g1 PHD_FILE: MSMg01no387_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:12 2005
         (412 letters)



>mm_chr11_80200829_80201640
          Length = 812

 Score =  721 bits (373), Expect = 0.0
 Identities = 403/414 (97%), Gaps = 3/414 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggtttcttttcacttgttctattgctacaaagcaagagctttggcccagttttcactg 60
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 200 taggtttcttttcacttgttctgttgctacaaagcaagagctttggcccagttttcgctg 259

                                                                       
Query: 61  ttttgagacaggatttctctgtagtcctcactcctctgcaactcactgctgataccaggc 120
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 260 ttttgagacaggatttctctgtagtcctcactcctctggaactcactgttgataccaggc 319

                                                                       
Query: 121 tggccttagattcagagatctgcctgtttctgcctccgagtgctgagattaaagtcaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggccttagattcagagatctgcctgtttctgcctccgagtgctgagattaaagtcaagt 379

                                                                       
Query: 181 gcaaacactgcctagaagaaagtttctgacccatcagtcaccatgagtagtctgctgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcaaacactgcctagaagaaagtttctgacccatcagtcaccatgagtagtctgctgagt 439

                                                                       
Query: 241 agtttctatgtttaaaaaaaaa--ttttattttaaaggtgcataaagaaaccttagatgc 298
           |||||||| |||||||||||||  |||| |||||||||| |||||||||||| |||||||
Sbjct: 440 agtttcta-gtttaaaaaaaaaaatttttttttaaaggtccataaagaaaccatagatgc 498

                                                                       
Query: 299 agtaccaaatgcaatacctgggagaacagacatagagttggaaatatatggcatggaagg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtaccaaatgcaatacctgggagaacagacatagagttggaaatatatggcatggaagg 558

                                                                 
Query: 359 tattccagagaaagatatggatganagacggcgacttcttgaacagaaaacaca 412
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 559 tattccagagaaagatatggatgaaagacggcgacttcttgaacagaaaacaca 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)