XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCCCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTCCACCT
CACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGC
AGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATT
GGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATC
CAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAACATATGGTACATCTACACAATGGAGCACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTACCCCCACGGATG
GACCTGGAGGCCATCATCCTGAGTGAGGCAACACATTCCCCAAGGAATTC
CCCCCATATGTACTCACTGATAAGTGGCAATTTAGCCTTACCCTACGATA
CCCCCGATATTCCATATCCTTCCCTTCACCCCCGCCATTTCCGAAACATG
AACACCGAAGTGCGGAACCCATGTCCCCCCCCTATAACCGGCACCATACA
CCCTTTGGATN

NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTTAGTTCTATACCCCATT
ATTCTTAGTGATGTGACCTTATATTATAGGTTTTCATAAACTTATTGATA
TTCTAGTTAAAATAATTTTAACTTTAGAAATAGAGAAAAGTTTGTATTTA
GATAACAAAAAATAGTTCAATTATTTTAAGGTTTAAGTTTTGATGCTATA
ATATCACGGAAGAGTATTTAATAAGCGTATCTAGGAAGTTTCTCTTGTAA
AGTTTCTATGACACAATGAACAATTACTCATGCAGTGCGGGCAGCCTGAG
CCATCCACATAAAGGGCAGGCAACTCATTTTTCTTTTCTTGCTATTTCTC
CTTTGAGTTGTGAAAATAAAGAATAGTCTTTTATAAAGTGTTAGAGTTTC
TATATTCTAATAAATTCTACTATTAAATCCAAAGTTGAAAATAAAGAAGA
AAACAAAAACAAATGGAAGGAAATAAATTTTATTTTTTTTCTTTTTTACA
CTCTTCAAATCTAAAATAGGTTTTAAAAAAGTAAAATTTATAAAAGAGGG
TATTTTAACTCTACTTATATGTACAATTTCTGGAAAAACATTCCTGAAAA
GATTAATTAATTTATTTCCAAAAATAATTTTATATTTTTTCCAACTAATT
TTTCAAAATCTCCCCCCTTATTTTTATATACTGGGTTGGACAAATTGTTT
GTAATTTCCCC

Query= MSMg01no387_f20.g1 MSMg01no387_f20.g1 CHROMAT_FILE:
MSMg01no387_f20.g1 PHD_FILE: MSMg01no387_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:24 2005
         (488 letters)



>mm_chr11_91905755_91906640
          Length = 886

 Score =  717 bits (371), Expect = 0.0
 Identities = 458/491 (93%), Gaps = 14/491 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtttagttctataccccattattcttagtgatgtgaccttatattataggttttcat 60
           ||||||||||| ||||||||||||||||||||||| ||    ||||||||||||||||||
Sbjct: 624 tcagtttagttttataccccattattcttagtgatatg----tatattataggttttcat 569

                                                                       
Query: 61  aaacttattgatattctagttaaaataattttaactttagaaatagagaaaagtttgtat 120
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaacttattgatattctaattaaaataattttaactttagaaatagagaaaagtttgtat 509

                                                                       
Query: 121 ttagataacaaaaaatagttcaatt-attttaaggtttaagttttgatgctataatatca 179
           ||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct: 508 ttagataac-aaaaatagttcaattgattttaaggtttaagttttgaggttataatatca 450

                                                                       
Query: 180 cggaagagtatttaataagcgtatctaggaagtttctcttgtaaagtttctatgacacaa 239
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| 
Sbjct: 449 cggaagagtatttaataagcatatctaggaagtttctcatgtaaagtttctatgacacag 390

                                                                       
Query: 240 tgaacaattactcatgcagtgcgggcagcctgagccatccacataaagggcaggcaactc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgaacaattactcatgcagtgcgggcagcctgagccatccacataaagggcaggcaactc 330

                                                                       
Query: 300 atttttc-ttttcttgctatttctcctttgagttgtgaaaataaagaatagtcttttata 358
           ||||||| |||| ||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 329 atttttcttttttttgttatttatcctttgagttgtgaaaatgaagaatagtcttttata 270

                                                                       
Query: 359 aagtgttagagtttctatattctaataaattctactattaaatcc-aaagttgaaaataa 417
           ||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||| 
Sbjct: 269 aagtgttagagcttctgtattctaataaactctactattaaatccaaaagttgaaaata- 211

                                                                       
Query: 418 agaagaaaacaaaaacaaatggaaggaaataaattttattttttttcttttttacactct 477
             ||||||  ||||| |||||||||||||||||||||| || |||||||||| |||||||
Sbjct: 210 --aagaaa--aaaaataaatggaaggaaataaatttta-ttgttttctttttgacactct 156

                      
Query: 478 tcaaatctaaa 488
           |||||||||||
Sbjct: 155 tcaaatctaaa 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 886
Length adjustment: 10
Effective length of query: 478
Effective length of database: 876
Effective search space:   418728
Effective search space used:   418728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)