Query= MSMg01no387_h16.b1 MSMg01no387_h16.b1 CHROMAT_FILE:
MSMg01no387_h16.b1 PHD_FILE: MSMg01no387_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:32 2005
(477 letters)
>mm_chr11_96749913_96750789
Length = 877
Score = 816 bits (422), Expect = 0.0
Identities = 446/454 (98%)
Strand = Plus / Minus
Query: 24 agactaagaagtcaggtcctgaagagacctcaggagttaagagcccttgatgctcacaga 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 agactaagaagtcaggtcctgaagagacctcaggagttaagagcccttgatgctcacaga 818
Query: 84 ggacccaggttctgttcccagcactcccatggcatctcacaaccacctgtaactctagtt 143
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 817 ggacccaggttctgttcccagcactcccatggcatctcacaaccaactgtaactctagtt 758
Query: 144 tcagaggatctgacactcccatctggcctctgcacatacatacacgccagccaacactca 203
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 757 tcagagaatctgacactcccatctggcctctgcacatacatacacgcaagccaacactca 698
Query: 204 tacctgcaaagtgaaagtaagttagtctttaaaaagcaaaacccaaaaagagtaaggagt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tacctgcaaagtgaaagtaagttagtctttaaaaagcaaaacccaaaaagagtaaggagt 638
Query: 264 caggccagtgagatagcctggcaaaagcaaacaaagaggcaaacaacaggcaaaggcaca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 caggccagtgagatagcctggcaaaagcaaacaaagaggcaaacaacaggcaaaggcaca 578
Query: 324 aaccaccataacagtcaagctgaactctatctctaaaacctacatggaggagaaagaaac 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 taccaccataacagtcaagctgaactctatctctaaaacctacatggaggagaaagaaac 518
Query: 384 caactctccagagttttcctgtgatgctcgcagaacacgtatatacactagagaaacacc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caactctccagagttttcctgtgatgctcgcagaacacgtatatacactagagaaacacc 458
Query: 444 taaataaaatatggaaagaggaacaagttttgag 477
|||||||||| ||||||| ||| ||||||||||
Sbjct: 457 gaaataaaatacggaaagaagaagaagttttgag 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no387_h16.g1 MSMg01no387_h16.g1 CHROMAT_FILE:
MSMg01no387_h16.g1 PHD_FILE: MSMg01no387_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:32 2005
(393 letters)
>mm_chr11_96614576_96615367
Length = 792
Score = 594 bits (307), Expect = e-174
Identities = 366/399 (91%), Gaps = 25/399 (6%)
Strand = Plus / Plus
Query: 1 agtgcctcttctggtgtgtctgaaggcagc-----tcgtatacataaaataagtaagtaa 55
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 213 agtgcctcttcttgtgtgtctgaaggcagctcaggtcgtatacataaaataagtaagtaa 272
Query: 56 atctgagagagagagagagagagagagaaagagagagagtttg-tttctttaaaaaaaaa 114
|||| |||||||||||| |||||||||||||| ||| ||| ||||||||
Sbjct: 273 atcttagagagagagag------------agagagagagtttgtttttttttaaaaaaaa 320
Query: 115 aagtatttactgttcttgcagaagatctgagtctggcccccagcacccttgtcagcagct 174
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtatttactgttcttgcagaggatctgagtctggcccccagcacccttgtcagcagct 380
Query: 175 cacaaccaaacacttctaacacacacacacacacacacacacacacacacacacacacac 234
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaaccaaccacttttaacacacacacacacacacacacacacacacacacacacacac 440
Query: 235 acacacacacacaaaaataaaatgtttaggttgttagattcagcagtagtgtcaagtatg 294
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacaca------aataaaatgtttaggttgttagattcagcagtagtgtcaagtatg 494
Query: 295 ctcatcaccatgcagtggggattacagcaaaacgaacatgcttctttttgtcctctggat 354
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctcatcaccatgcagtgaggattacagcaaaacgaacatgcttctttttgtcctctggat 554
Query: 355 gactttgttctatctagagatgatcttatgtttctagag 393
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 555 gactttgttctatctagagatgatcttatgtt-ctagag 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 792
Length adjustment: 9
Effective length of query: 384
Effective length of database: 783
Effective search space: 300672
Effective search space used: 300672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
