BAC Information

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BAC

Clone NameMSMg01-387K19
Chromosome11 (Build37)
Map Location 11,945,296 - 12,143,031
singlet/doubletdoublet
Overlap geneCobl
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387K19.T7 (MSMg01no387_k19.b1)MSMg01-387K19.TJ (MSMg01no387_k19.g1)
ACCAG490352AG490353
length774779
length of high quality
(start - end)
249 (73 - 321)407 (75 - 481)
definitionCHROMAT_FILE: MSMg01no387_k19.b1 PHD_FILE: MSMg01no387_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:48 2005CHROMAT_FILE: MSMg01no387_k19.g1 PHD_FILE: MSMg01no387_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,142,783 - 12,143,031)(11,945,296 - 11,945,702)
sequence
CCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACAGTCCTCCTGTCTCAGAATGCTGAGATTACAGGCATGTGACTCT
CACACCTGGCCCAGGATTTTATTTGTGTACAATAGAAGTACATTGCAAAC
ATTAGCAATGACTCCAGGGGAACTTTATCTGCGTGTTACGGGAGTTTACT
TTTTACAGCTGTTTTACAGGTAAAATACACATAGAGTGGCATGCACACAT
TTAAGGAGCTCAAGGCTCATTTTAATGGGACTCCATCCTACCCATCTTGA
GACTGGTTTTTGAAAAAGTCACAAGAAAAATAAAGATGATAGAGTATAGA
GTCCCTACAGGTTCATCAGTATGTGGACATATGCGATTTTTAAGCTATTC
CTACTGACTGGTTCTGCCTTGGGGCACAGTTTGTATAGGCTGATTGTACA
GCAAAGCGTCTGGTATCGCACCAACGGCGTTATACCCTAACTGCCCCCGT
ATGCCCCCCACACTCCCCCCATCCGACATTAATGCATCCCCCCCCCCTTG
CATAGCCCTACCTTTCTCCACCTTCCCCCCCGCTCCCCCCGACACCTCCT
TCCCCCATGCTTCCCTTTTCCACCCCCCTCCCGTTCCCCCCTTCCCCCCC
TTTCCCCCTTCTTGCCCCATACCTTCCCTTCCTCCCGCCCCTTTCCGTTT
TCTTTTTCGCCCCCCTTTCCCCTTAACCCATTCTCCCCTGCTCGGTCCCC
TCCCCCGTGTCCCCCCTTTTTTTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGACCTTTCAGAGCCCAGAGGTAACT
ACAGGCTGGGGACCTCACTTTGTTAGGTAGCTTGAAGACCCACCCAAAAT
ATTGTGGAAGGAGGGCATTGAATATGCAGGTAAGCAGTGTATTCAGAATG
TCTGAAAGAGGGAGGTGTTTTACTGATGAGCTATGAAACACCAGGTGTTA
TTCAAAACTATAATGTATGTCAAGTGGATGGAGGCAGCTAGTAAGGGGGT
GAGTTTATGGAATTACATTTAGATCATGGATTCAGGCCCTAGACATAGAG
ACCTTATCAAGCAAGAGGTTATAGACTAGGACATCAAGATTCATTTACAG
AAAAGGTAAATACTGAGATGTGATTGATTGCCACAGTACAAATGGTCTCC
TTCAGTTTACTCTTAGATCAAACAGAAGCCCCAAATCCTAGGGGTCCTTG
ATGGAGGTGAGACAGATGGTCAGTGGGGCAAAAAGTGGAAACCACAGGAA
AGCCTGCTTTCCACGGCAGAATGGCCTTGGAGTTGACATCTCCCTTTGAC
AAAACGGGGAAATTCTGACTTTTACAACGGTTTTGGATTCCCCCGAAAAA
AAGCCCTTGTTTCCCTTTTTCAAACTCAGGGGGGTGGAAAAGATCTTTGT
GGGGGGTGTGATTCCCCCTCTTTGTCTCTACACCCTCTCCGCTCCCTCTT
CACCTCTGTGTCCAACACCCCGTATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_k19.b1 MSMg01no387_k19.b1 CHROMAT_FILE:
MSMg01no387_k19.b1 PHD_FILE: MSMg01no387_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:48 2005
         (249 letters)



>mm_chr11_12142583_12143231
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgctgagattacaggcatgtgactctcacacctggcccaggattttatttgtgtacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatgctgagattacaggcatgtgactctcacacctggcccaggattttatttgtgtacaa 390

                                                                       
Query: 61  tagaagtacattgcaaacattagcaatgactccaggggaactttatctgcgtgttacggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tagaagtacattgcaaacattagcaatgactccaggggaactttatctgcgtgttacggg 330

                                                                       
Query: 121 agtttactttttacagctgttttacaggtaaaatacacatagagtggcatgcacacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtttactttttacagctgttttacaggtaaaatacacatagagtggcatgcacacattt 270

                                                                       
Query: 181 aaggagctcaaggctcattttaatgggactccatcctacccatcttgagactggtttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaggagctcaaggctcattttaatgggactccatcctacccatcttgagactggtttttg 210

                    
Query: 241 aaaaagtca 249
           |||||||||
Sbjct: 209 aaaaagtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no387_k19.g1 MSMg01no387_k19.g1 CHROMAT_FILE:
MSMg01no387_k19.g1 PHD_FILE: MSMg01no387_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:48 2005
         (407 letters)



>mm_chr11_11945096_11945902
          Length = 807

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacctttcagagcccagaggtaactacaggctggggacctcactttgttaggtagcttg 60
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tgacctttcagagcccagagataactacaggctggggacctaactttgttaggtagcttg 260

                                                                       
Query: 61  aagacccacccaaaatattgtggaaggagggcattgaatatgcaggtaagcagtgtattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagacccacccaaaatattgtggaaggagggcattgaatatgcaggtaagcagtgtattc 320

                                                                       
Query: 121 agaatgtctgaaagagggaggtgttttactgatgagctatgaaacaccaggtgttattca 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 agaatgtctgaaagagggaggtgttttactgatgagccatgaaacaccaggtgttattca 380

                                                                       
Query: 181 aaactataatgtatgtcaagtggatggaggcagctagtaagggggtgagtttatggaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactataatgtatgtcaagtggatggaggcagctagtaagggggtgagtttatggaatt 440

                                                                       
Query: 241 acatttagatcatggattcaggccctagacatagagaccttatcaagcaagaggttatag 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatttagatcatggattcaagccctagacatagagaccttatcaagcaagaggttatag 500

                                                                       
Query: 301 actaggacatcaagattcatttacagaaaaggtaaatactgagatgtgattgattgccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actaggacatcaagattcatttacagaaaaggtaaatactgagatgtgattgattgccac 560

                                                          
Query: 361 agtacaaatggtctccttcagtttactcttagatcaaacagaagccc 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtacaaatggtctccttcagtttactcttagatcaaacagaagccc 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)