BAC Information

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BAC

Clone NameMSMg01-388H23
Chromosome11 (Build37)
Map Location 3,079,278 - 3,079,690
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388H23.T7 (MSMg01no388_h23.b1)MSMg01-388H23.TJ (MSMg01no388_h23.g1)
ACCAG490979AG490980
length763786
length of high quality
(start - end)
413 (60 - 472)484 (75 - 558)
definitionCHROMAT_FILE: MSMg01no388_h23.b1 PHD_FILE: MSMg01no388_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:51 2005CHROMAT_FILE: MSMg01no388_h23.g1 PHD_FILE: MSMg01no388_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCGAGTGTGGTTGGTTTGTCTTGGTCCTGGTGTATGCCATACTGAATTTT
GATCTGACACCCAGTGGTCAGTTACCATGCTTTGCTGTTTCCTTGAGAAG
GTAAGAGCAGTGTGAAGTAGAGCTGACTGCACAGAGATGCCAGCCCAGCT
ACCTCACATCAACTTTCTGATGCTCTCTCATCTCCTTAGGATTTTCCATG
AGCAGAAAATATTACAGAAGGTCTTCGGAGAATGGAGGGAAGAATGGTGG
GTCTCTCAGAGGGAGTAGAAGCTCTGTGTCCGAGCTGACTGTCACTACAG
GTTGGCTTTTATGTCTAATCACTTTATGCTTGTTGAAATACAAATTTTAC
AGTGTCAAACAATTATCCAATGTCTTGTTTCTGTTCCAAAGGAGTAAAGT
TTTGGATTACTTTCTAGCTTTTTAANAATCCTTTTGAGCGTAAGTGAATC
CTTACTTATTTTCGGTTGTCTGTGCACCCCCCTATGCATGCTCCTCTGAT
TCAGACGAAAGTGGGGGCCCTGCTGAGGAACTGGGAGGTTTACCACGCAT
TCCCTTATTTTTAAACCCAAAGTTTTGTTTTGTAAAGCATTATCTCTTGC
CACCCGCTTTTGATCCAAAAGGGTGTCCCCCCCCCATACTTTCCAATAAA
TTCTGGCCCGCTACTCTTCATAAACAACCGTCCCTTCCCCCTTCCTTCTC
CCTCTCTTTCCCT
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCT
GTGTTGTGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGA
ATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTAT
GACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCG
GTGATGGTAACCGTCCCAGGTTTTCTTGTCCCGGGTTATCTCGTCCCAGG
TCTTCTCGTCCCGGGTTTCTGTTCAAACTCTTACACGCATTCACGAAACT
GGCCAGGAAGAATGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATT
GCTTACATCTTCAGGAGCCAGAGCAAGAGTGCAAGAGTGCAAGAAAAAGA
ACAAGAACAAGAAAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAAGA
AAAAGAAAGCAAGAGAAAGAATGGCAAAACCCTGTCCCTTTTAAGGAGAA
TTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGG
CCCAATTGTCATCCTGGGAAAGGCAGAACACCTGGGGGGAAAAACTGCCC
CTGCCCGTGTGCAGACTATGGTTACCCTTTAAAACACAGCTTGTCACGCC
ATCTTATAATGGGCAAAGGGGGGGCCGGCTCCCTCCCAATTACTGAAAAA
TGGGAAAAACCCCCCCTATGGAGCGCGAAATTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_h23.b1 MSMg01no388_h23.b1 CHROMAT_FILE:
MSMg01no388_h23.b1 PHD_FILE: MSMg01no388_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:51 2005
         (413 letters)



>mm_chr11_3079078_3079890
          Length = 813

 Score =  752 bits (389), Expect = 0.0
 Identities = 407/413 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggtttgtcttggtcctggtgtatgccatactgaattttgatctgacacccagtggtc 60
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 613 gttggtttgtcttggtcctggtgtatgccatactgagctttgatctgacacccagtggtc 554

                                                                       
Query: 61  agttaccatgctttgctgtttccttgagaaggtaagagcagtgtgaagtagagctgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 553 agttaccatgctttgctgtttccttgagaaggtaagagcagtgtgaagtggagctgactg 494

                                                                       
Query: 121 cacagagatgccagcccagctacctcacatcaactttctgatgctctctcatctccttag 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 493 cacagagatgccagcccagctacctcacatcaactttctgatgttctctcatctccttag 434

                                                                       
Query: 181 gattttccatgagcagaaaatattacagaaggtcttcggagaatggagggaagaatggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gattttccatgagcagaaaatattacagaaggtcttcggagaatggagggaagaatggtg 374

                                                                       
Query: 241 ggtctctcagagggagtagaagctctgtgtccgagctgactgtcactacaggttggcttt 300
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggtctcccagagggagtggaagctctgtgtccgagctgactgtcactacaggttggcttt 314

                                                                       
Query: 301 tatgtctaatcactttatgcttgttgaaatacaaattttacagtgtcaaacaattatcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tatgtctaatcactttatgcttgttgaaatacaaattttacagtgtcaaacaattatcca 254

                                                                
Query: 361 atgtcttgtttctgttccaaaggagtaaagttttggattactttctagctttt 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgtcttgtttctgttccaaaggagtaaagttttggattactttctagctttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)