BAC Information

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BAC

Clone NameMSMg01-388M23
Chromosome11 (Build37)
Map Location 115,211,066 - 115,211,473
singlet/doubletsinglet
Overlap geneC630004H02Rik
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3
Downstream geneCdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388M23.T7 (MSMg01no388_m23.b1)MSMg01-388M23.TJ (MSMg01no388_m23.g1)
ACCAG491216AG491217
length804787
length of high quality
(start - end)		397 (40 - 436)407 (78 - 484)
definitionCHROMAT_FILE: MSMg01no388_m23.b1 PHD_FILE: MSMg01no388_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:13 2005CHROMAT_FILE: MSMg01no388_m23.g1 PHD_FILE: MSMg01no388_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTTGTATTACGATGTGGTAACAACGGGGTCTGTGCTTTCCCAAACTGAGG
AAATATCTCAGTTGCCTAAACTGCTCACCCCTCCCTAAAAAAGAAACACC
TATTGAACTGTGGGAACTGAATAATCAAATTCTTCAGTGTGTGCAGAACT
ATGCTTGTAGTCATGCTAAGAACTGATGCAATTAATTATGGGAACAGATC
TTAATAAGCATCCTTGTAGATATAAAGTTTTTGAAACCTACTTTTAATAA
TGGTTGAACCTCTCCTCTAGCCCACCACCCAGCAGAGGTAGTGGAAAAGT
TAGTAGGATGTAGGGGAAGTGGACCTGTTCAGCAATAGTTCTTTGGGGGC
GAGCTGCTTGGTTCATACTTCCTGATTACTCCTGTAGAATTTATCCTTCT
CAGGCCTTGGATGGGCTTGAAGACGGGACTGGTGAAAGATCTATCACCTT
AACAGCAGACACCAATGTTTCCACTGCCTTCTCAACCCTCTTTATGTGTA
AAAAAACAGGCCCTCAGGTTTCACCCTCCTAAAAGCTGCTACTAAAAAGG
TCCAAACCCAGTTAACCCCCTTATCCAACCCCAAAAATAGGTTTCCAAAG
AAACTTTTTTCTATTCCTTTTATATAAAAAATTTTACGGGAATGTGCCCC
CCTAACTAAACCCTCCGGGGGTGATTACTTCTTAAACAAATACTGGTCAC
GCTTCTTTCCTTCTCTGCGGCAAACCATTCTGTCGTCCTTCTTTCCTTAA
CACG

NNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCACACGCAGAATTCAGAACCTTTGGAAGAGCAGCCAG
TGCTCTTAACTGCTGAGCCATCTCTCCAGTCCCTGTCTTTGGTTTTCTTA
CTCTAGTCTTTTCCGAAGCTGGAGCTCTGACCGCCCCTGTTCAGTGCCGT
CTGCCCAAACCCCAGCTCCCAGAACCTCCTCCAGCTATGTCCCTCACCCA
ATCTGATGTTGGGCTCCACTGGCCACTGGCTGATGCATTGGACAATCTCC
GTTGCTCTCTCCATGTTTGTTTTTTCTCCTGGTTCCCAGAAATAGTGACC
AGGGAAGGAATGGATACAAATGAATACAAGGTGCAACCATAGAGCAACAT
GTCTCCTCTGGCCCCACTACAGCACTGGGGGGGGGGGGTGCTACACCAGA
GGGTTGGTCCAGACCTATACCCTTTGCCCTGGGCCCAAGGGCCAGCCTAG
CCCAGCCCAGCCCAGCTCAGTGACAGGTTTAGGGCCTGGGGCTGAAAGAG
AATGCACGCTATAGGCCCAACTTCCAATAATACTGTCGTATGACGAACCC
CTACGGTCACTGGGTTTTGCCCGCCACCCGATAATCCAAACGGGAAACAG
GCTTGCCATTTTTTTTCTTCTCCCTCCGGGCGCGTGGGAGGATTCCATCC
AACTCCCTTTCTTTAATTCGGCTTCCTCCCTATTTTCCCCCCTCCTCCCC
CTTTCTCCCACTCTTATGTCCCTTCACTCATTAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_m23.g1 MSMg01no388_m23.g1 CHROMAT_FILE:
MSMg01no388_m23.g1 PHD_FILE: MSMg01no388_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:13 2005
         (407 letters)



>mm_chr11_115210866_115211673
          Length = 808

 Score =  735 bits (380), Expect = 0.0
 Identities = 401/408 (98%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacctttggaagagcagccagtgctcttaactgctgagccatctctccagtccctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacctttggaagagcagccagtgctcttaactgctgagccatctctccagtccctgtc 260

                                                                       
Query: 61  tttggttttcttactctagtcttttccgaagctggagctctgaccgcccctgttcagtgc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tttggttttcttactctagtcttttccgaagctggagctctgactgcccctgttcagtgc 320

                                                                       
Query: 121 cgtctgcccaaaccccagctcccagaacctcctccagctatgtccctcacccaatctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtctgcccaaaccccagctcccagaacctcctccagctatgtccctcacccaatctgat 380

                                                                       
Query: 181 gttgggctccactggccactggctgatgcattggacaatctccgttgctctctccatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgggctccactggccactggctgatgcattggacaatctccgttgctctctccatgtt 440

                                                                       
Query: 241 tgttttttctcctggttcccagaaatagtgaccagggaaggaatggatacaaatgaatac 300
           ||  |   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggctggactcctggttcccagaaatagtgaccagggaaggaatggatacaaatgaatac 500

                                                                       
Query: 301 aaggtgcaaccatagagcaacatgtctcctctggccccactacagcactggggggggggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtgcaaccatagagcaacatgtctcctctggccccactacagcactggggggggggg 560

                                                           
Query: 361 g-tgctacaccagagggttggtccagacctataccctttgccctgggc 407
           | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgctacaccagagggttggtccagacctataccctttgccctgggc 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 808
Length adjustment: 9
Effective length of query: 398
Effective length of database: 799
Effective search space:   318002
Effective search space used:   318002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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