Query= MSMg01no388_o14.b1 MSMg01no388_o14.b1 CHROMAT_FILE:
MSMg01no388_o14.b1 PHD_FILE: MSMg01no388_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:20 2005
(341 letters)
>mm_chr11_102404833_102405573
Length = 741
Score = 638 bits (330), Expect = 0.0
Identities = 341/350 (97%), Gaps = 9/350 (2%)
Strand = Plus / Minus
Query: 1 cctgcctctgcctcccgagtgctgggatcaaaggcttgcctggcctgaggtatgtttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctgcctctgcctcccgagtgctgggatcaaaggcttgcctggcctgaggtatgtttctg 605
Query: 61 ttttcctaagttctgctacagtttcgtcttgaaacactgtgtacttttgtttgt------ 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttttcctaagttctgctacagtttcgtcttgaaacactgtgtacttttgtttgtcttgct 545
Query: 115 ---cttgctgcccttgccacactagcactgccatttacacttaagtgaaagagactaaag 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcccttgctgcccttgccacactagcactgccatttacacttaagtgaaagagactaaag 485
Query: 172 gaattataaaccactatacagatactgaaagaagtcattgatagtacagcaaataccaga 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaattataaaccactatacagatactgaaagaagtcattgatagtacagcaaataccaga 425
Query: 232 agctgtggtgttgattttcctctgattaaaaagcaaatttgaccttttgactgtggaact 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agctgtggtgttgattttcctctgattaaaaagcaaatttgaccttttgactgtggaact 365
Query: 292 gtaaccaaatatgcttattgcatattctattagagtagaaagtgcagtat 341
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtaaccaaatatgcttattgcatattctattagagtagaaagtgcagtat 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_o14.g1 MSMg01no388_o14.g1 CHROMAT_FILE:
MSMg01no388_o14.g1 PHD_FILE: MSMg01no388_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:21 2005
(491 letters)
>mm_chr11_102218865_102219752
Length = 888
Score = 824 bits (426), Expect = 0.0
Identities = 474/496 (95%), Gaps = 13/496 (2%)
Strand = Plus / Plus
Query: 1 aacccactggatccaaatagtgaatctaaagtcaagccagtccagggtgggaaacctggc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacccactgcatccaaatagtgaatctaaagtcaagccagtccagggtgggaaacctggc 260
Query: 61 ctcttctgccctcccacaagttccctggggataaaacctgacttcttctgtcctcccaca 120
|||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 261 ctcttctgtcctcccacaagctccctggggataaaacctgacctcttctgt----ccaca 316
Query: 121 agctccctggctaaccagccacatctccctccatccccccagccctccacactcactctt 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agctccttggctaaccagccacatctccctccatccccccagccctccacactcactctt 376
Query: 181 tctgtcatgagagttgctgcagccctgcccagctgggtatagtcgacatgcggagcctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctgtcatgagagttgctgcagccctgcccagctgggtatagtcgacatgcggagcctca 436
Query: 241 ggtc----ttttcagaacaagaaggaagcccacaggctccggcaacaccaggtcctccag 296
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 437 ggtcccag----cagaacaagaaggaagcccacaggctctggcaacaccaggtcctccag 492
Query: 297 cggcacggcctccttcagtctcacgaagcccagtacaggcttctccagaaaattagcccg 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aggcacggcctccttcagtctcacgaagcccagtacaggcttctccagaaaattagcccg 552
Query: 357 gcctgtgggaggcaccaggtggtgaagccaggccactggggctcgtagtttatgaattca 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 553 gcctgtgggaggcaccaggtggtgaagccaggccactgggactcgtagtttatgaattca 612
Query: 417 agagtggggg-ctgcccggggcctgaagtaggatgcccggggaaggagttcttacccact 475
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agagaggggggctgcccggggcctgaagtaggatgcccggggaaggagttcttacccact 672
Query: 476 agcaccagtgtggttt 491
||||||||||||||||
Sbjct: 673 agcaccagtgtggttt 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 888
Length adjustment: 10
Effective length of query: 481
Effective length of database: 878
Effective search space: 422318
Effective search space used: 422318
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
