BAC Information

Click to search

BAC

Clone NameMSMg01-389H05
Chromosome11 (Build37)
Map Location 52,331,221 - 52,331,466
singlet/doubletsinglet
Overlap geneLOC100040523
Upstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667
Downstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389H05.T7 (MSMg01no389_h05.b1)MSMg01-389H05.TJ (MSMg01no389_h05.g1)
ACCAG491703AG491704
length797776
length of high quality
(start - end)
133 (76 - 208)246 (80 - 325)
definitionCHROMAT_FILE: MSMg01no389_h05.b1 PHD_FILE: MSMg01no389_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:03 2005CHROMAT_FILE: MSMg01no389_h05.g1 PHD_FILE: MSMg01no389_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTCTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATC
CGCGGAATTCACAGATTTTCCTCTGTGAGTTCAAGGCCAGCCTGGTCTAC
ATAGTGAGACCCCATCTTAAAAACAACCAAACACACAGACACACACACAC
ACACACACACACACACACACACACACATAACCAGAGTGGGGGGAATGGCT
AGAGAACTGGCTCAGCACTCAACAGCACTTGTTTTTGTTGTTATTGCTCG
CTGAGAGAGAGAGAGTGAGAACAATTAACACAAAGTGAACAAATGAACTA
AATAATATAAGACAAAGATGCATGGTTCTTTTGACAGGCTCAGCAGGTAA
AGGTGCTTGTTATTCATGTCTGCACACTGGAGCTCAAGCCCCAGAACCGA
TTTTTCAACAATGATGGAGCGGAAGGCATACTTCCAACTCACTCTTTGAC
TTCCCAGTTGCATGCTGTCTGCCTGCCCCCTTCCCACTGCTAGGAAATAC
TCCGGTTGTGGTGCTCTCGCCGTCATTCATTCCCCCTCTTGCCCCTCCCT
TTTCCCCTCTCTCTACTCGCGCCCTTTCTGTCTCCCACCTCTGTTCCCCC
CCCGCCCGTTTCCCCTTCCCTTTCTCTTTTCCCTACCCTCCATTCCCACC
TATCATTCTTTTCCTTTTCCTTTTTTCCTCTCCCCTGCCTCCTTCTTACC
CTTCTCCTCACCTCCCCCTTCCTTCTTTTCCTTCCCATTTCTCTCCCTTC
CTTTTCTTCTCCCCTTCCGTTCTCTTCCTTCCCGCTCTTTCCCTCTN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCACAGTCTAGAATCCCAG
GCATTGAAGACGCGTGTAAGAAGCTAAAGCCATGGTGTCACAGACGCAGA
AGGACTGGAAATACACTCTGGTGGCCTGGAGGGTCAGGAGACATAAATGG
ATATAGATCCATGTGCACAAATGTGGGGCTGCCATACCTTGTGGGTGGGC
TTTATGGAGCCTGGGCCCCTGACACAAAGCTGAGTTTAGAGCCAGCCCAC
CCATGGGAGGGCCAATCTCTGGAGAATTTCTTACCAAGGGAACTTTTACT
CCCTGCAAACAGGAAACAAAACTAACCCAAGGGGCTGGAGAGACAGCTCA
ACAGTTAAGAGCACTGGCTGTTCTCCCAGAGGACCCGGGTTTTAATTTCA
ATCACATACATGATGGATGGCTCAGAACCATGGAACTCCAGTTCCAGGGA
ATCCAGTGCCCTCTTCTGGCGTCCATGGGTACTGCATGCACACTAAGCAT
AGACATACATGCAGGCAAAGCACTGATGGTCAAGAACAGGTGATCATCCC
AGCTTTTTCTGTTTCCCCAAGGACCCTAAGTAATGATTGCTTATTGACCT
TACGGAGTTTAAGCCCCTTTTCTTGTTGTTATCTCTTTTCCCCAACCAAA
TCTTCCTATAATACATCCTTCCCCTTTCGGCACCCTTCTTTAAATTTTCC
CTCCACCCAAGTACCCCCCCGCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_h05.g1 MSMg01no389_h05.g1 CHROMAT_FILE:
MSMg01no389_h05.g1 PHD_FILE: MSMg01no389_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:03 2005
         (246 letters)



>mm_chr11_52331021_52331666
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcacagtctagaatcccaggcattgaagacgcgtgtaagaagctaaagccatggtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 actcacagtctagaatcccaggcattgaagacgcgtgtaagaagctaaagccatggtgtc 387

                                                                       
Query: 61  acagacgcagaaggactggaaatacactctggtggcctggagggtcaggagacataaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acagacgcagaaggactggaaatacactctggtggcctggagggtcaggagacataaatg 327

                                                                       
Query: 121 gatatagatccatgtgcacaaatgtggggctgccataccttgtgggtgggctttatggag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatatagttccatgtgcacaaatgtggggctgccataccttgtgggtgggctttatggag 267

                                                                       
Query: 181 cctgggcccctgacacaaagctgagtttagagccagcccacccatgggagggccaatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cctgggcccctgacacaaagctgagtttagagccagcccacccatgggagggccaatctc 207

                 
Query: 241 tggaga 246
           ||||||
Sbjct: 206 tggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)