BAC Information

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BAC

Clone NameMSMg01-391I16
Chromosome11 (Build37)
Map Location 115,947,248 - 115,947,484
singlet/doubletsinglet
Overlap geneWbp2
Upstream geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d
Downstream geneTrim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391I16.T7 (MSMg01no391_i16.b1)MSMg01-391I16.TJ (MSMg01no391_i16.g1)
ACCAG493289AG493290
length841795
length of high quality
(start - end)
226 (62 - 287)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no391_i16.b1 PHD_FILE: MSMg01no391_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:48 2005CHROMAT_FILE: MSMg01no391_i16.g1 PHD_FILE: MSMg01no391_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGACGCTAAACGACTACTATATTTCGAACACCCGCGGAATTCGCTGACT
CTCCCAGTCTGGGTATCCAGTGAGCTCCAAGCATCTGTCTGCCTTTACCC
TTGGCTCTGAGGTGACAGACACTGAGGTCACTAATGAGCTGTCTTATCTG
GAGCTCAGCTCCTCATGTGTGTGCAGCAAGCTCTTTGCCAACTAAGTCAT
CCTCCTGGCTCTGAGACTTATTTTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTGTATGTGCATAACCGC
CCCCCTCTTTCTCTTTTTCNNACANCCCCCCCCCCCCCGACAAGCCCCTT
TTCCCTCCCCCCCCCCCCCCCGCCGACCCTCTCCCACCCACTTATTATAA
CCCCCCCCCCCCACCCCCACTCCCCCCCAGCACCCAACTTCCCCTTAACC
CCCCCCTCTCTTACTTCCCACCACCTCCTTTTTCTCCTATCCCCCCCCCC
CCCCCTCCCCCCTTTTTCTTACTTTCCCTCCCCACCCCCCTCCCCACATC
CCCCCCCTCCCCCCCCCCATCTTAACCCCCCCTCCCCCCCCCCCTCTTTT
TCCCCCCCTCCCTTTTCTCTCCCCCTCCCTCTTTTTTTTTCCATCCCTCC
CCCCCCCTCTTTATTTTTATTTCTCCCGCCCCCCCCCCCCCCTCTTTTTC
TTTCCTCCCCTCCTTTCCTTCCTCTCACCCCCTCCCTCCCCCTCTCCCCC
TCTTTTTCTTCCTCTTCTAGCTTCCTCTCTCCTCCTCCCTCCTCCTCTAT
ACACTCATCACCCCTCTCCCCTCTCTCTCTCCCCACTCTTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAATGGCCTGTGTCAGTTCCCTGA
ACAAAGGTCTCCCAACTTTAAGATTCTTTTTTCTCTCCCCTCCCTTGAAC
TGCTGGGCTTCTCTGTTCCTCTTGTTTCTTGTTCCTTGGAATTCTGACTC
TCCTGACTTGCACTATCCGGGCTTGGATTAACTTGATAGCCAAGATATAC
ATGATGGAGGTCAAGCCCACACACAGTGTAGACAGGCACCCATCTTGGGA
CTTGTCACCTGTTATGCTGATTCAGACGAGAAGGTGGCAGTGACAAGGCC
AGGTTCTGCTGACCTCGTGCGCGTAGGTCTTGGGAAGGGGCTGGCCAGCA
CATGTGCCTGGTCACCACTTCTTTAACCTGAGCTGCCCCTCTTTCATTGC
ACCAACAACGGATCATTTGCCACAGGAGGAGACAGCCGATCGCAACCATA
CTAACTCACACCTTTTTATCTTGTAATCTGATACACCTTACCTTGTCCCC
CTGCCATACCCTTGTCCTCGTTCTTTCCTCTCACCCCTGTTTCTTCCCAT
GCCCCTTTCCCCGACTGGCTCCTCCTTTCTTACTGCCCTCTCCGGTTTCC
CCCGACTCTCTTTTTTTTTCCCTTTCCCTTCCCCCCCCCCCCCCCCCTTT
CTTTCCCCCTCCCCCCTTTTTTCTCCCCCCCCCTCTCCTATTTTCCTCCT
GTTATGCATCCCCTCCGTCCCCTTTCCCGCCTTATTCGTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_i16.g1 MSMg01no391_i16.g1 CHROMAT_FILE:
MSMg01no391_i16.g1 PHD_FILE: MSMg01no391_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:48 2005
         (240 letters)



>mm_chr11_115947048_115947688
          Length = 641

 Score =  391 bits (202), Expect = e-113
 Identities = 229/238 (96%), Gaps = 3/238 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatggcctgtgtcagttccctgaacaaaggtctcccaactttaagattc-ttttttct 59
           |||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 437 ttaatggcttgtgtcagttccccgaacaaaggtctcccaactttaagattctttttttct 378

                                                                       
Query: 60  ctcccctcccttgaactgctgggcttctctgttcctcttgtttcttgttccttggaattc 119
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctcccct-ccttgaactgctgggcttctctgttcctcttgtttcttgttccttggaattc 319

                                                                       
Query: 120 tgactctcctgacttgcactatccgggcttggattaacttgatagccaagatatacatga 179
           |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct: 318 tgactctcctgacttgcactatccgggcttggattaacttgagagccaagagagacatga 259

                                                                     
Query: 180 tggaggtca-agcccacacacagtgtagacaggcacccatcttgggacttgtcacctg 236
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tggaggtcagagcccacacccagtgtagacaggcacccatcttgggacttgtcacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space:   145992
Effective search space used:   145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)