BAC Information

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BAC

Clone NameMSMg01-391I24
Chromosome11 (Build37)
Map Location 28,450,037 - 28,450,413
singlet/doubletsinglet
Overlap geneCcdc85a
Upstream geneLOC100042377, EG626571
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391I24.T7 (MSMg01no391_i24.b1)MSMg01-391I24.TJ (MSMg01no391_i24.g1)
ACCAG493305AG493306
length792820
length of high quality
(start - end)
378 (60 - 437)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no391_i24.b1 PHD_FILE: MSMg01no391_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:49 2005CHROMAT_FILE: MSMg01no391_i24.g1 PHD_FILE: MSMg01no391_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCGCTAATACACTCCTATAGGTCCACGATCCGCGGAATTCAACCCCA
TTTCTAAAGTACGCTGGCTAAGGACCTTACAAAATGTGAAGAGGAAGCCA
ACTACTCTATTCCTATTGACACACAGAATCTCTAAACACAATGAAATGGT
TGCTGTTTTACAACATTATATGTTGCTACACCGAAATAAAAAACTAGAAT
ATTCCTTCCAAAGTACAGGCAATGCTCTGAACCCACTGTTGTGTATTGAT
GATGAGCCAGGGTCAGGAAGCCTTCCAATTTGTCAAGACAAGCAGATTTT
TGTATGACTTTTTCTTTTGCTTAATACTGTACAAGGACCAAATAAAAACA
TGACTATGACTTGAATTGGTCCTTGGGCCAGTGGGTGTGGCCTGCCATGT
CTAGAGGTTCTTGAGAAGCCACTTGAAGCCTCTTTCAAAAAGCACAGAGC
TAGTGCAGCCCTGTGTCACCAATGCTGCTCTGCAGCATCTGAAGTTGCCT
TCCCTACATAGAANGCAAGCGTTGGCCCTACTGAAGACTTCCAACTTCCC
AAATTTTCCCCCCCCCCCCCCCCGGATTTTATGGCTTCCAACTTCCCCTT
ACCGAAAAACCTTTTGAGCCCCACTTTAAGAAAAAACTCTTATGACGCCA
CCCCAACCCCTTTGTTTCGCGCCACCTGTATTTTTCATAACCCCCTTTTC
CCCACTGTCCAACCTACCCTTCTTCATGATATTAGGCCCCGCCCTCACCC
CTATTCCTCTTCCCTCCTCCCTCACTCCCTCTCCCCTCCCTC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTGTATTTGTACCCCGTTTTTAA
TAGAGTTATTTGATTTTCTGGAGTCCAGCTTGTTGAGTTCTTTGTATATA
TTGGATATTAGTCCCCTTTTAGATTTAGGATTGGTAAAGATAAAATTGAC
CATATAATTTTTCACAAAACAGGCCTCAACAGATACAAAAATACTGAAAT
TATCCCCTGCATCCTATCAGATCATCACTGACTAAGGCTGATCTTCAATA
ACAACATAAATAATAGAAAACCCTCTTACATGTGGAAGCTGAACAACACT
ACTCAATAATAACTTGGTCAAGGAAGAAATAAAGAAATTAAAGACTTTGT
AGAGTTTAATGAAAATAAAGACACAACATGTGGAAACTTATGGGACACAG
CGAAAGCAGTCCTAAAAGGAAAACTCATAACTCTGAGTGGTTTCAAAAAG
AAACTAGAGAGAGCTTACACTAGCAGCTTGACGCACACCCTAAAGCTCTA
GAAACAAAGGAACGCATTTCTCCCTCGAGGGATATATGACCGGAAATAAT
CCAACTCCGCGGCTGAAATTCCCCCCCGCTCAACCTTTCGCAATTTTCTT
CTGATTCCCCCCTTCCCGGAGCCCGTTTTTTGGTTTCTGTGGTTTGGCCC
CTTCCCTTTTCCCCCCCCCCCCCCCTTTCCCTTCTCCCCTTCCCTTTTTT
CTTCCCCCCCCCCCTCCGTCTCTCCTCCCCTTTTCTTTCCCCNCCCCCCT
TTCGCCCTTTGTATCCNCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_i24.b1 MSMg01no391_i24.b1 CHROMAT_FILE:
MSMg01no391_i24.b1 PHD_FILE: MSMg01no391_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:49 2005
         (378 letters)



>mm_chr11_28449836_28450613
          Length = 778

 Score =  661 bits (342), Expect = 0.0
 Identities = 369/378 (97%), Gaps = 1/378 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacgctggctaaggaccttacaaaatgtgaagaggaagccaactactctattcctattga 60
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 tacgctggctaa-gaccttacaaaatgtgaagaggaaaccaactactctattcctattga 260

                                                                       
Query: 61  cacacagaatctctaaacacaatgaaatggttgctgttttacaacattatatgttgctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacagaatctctaaacacaatgaaatggttgctgttttacaacattatatgttgctac 320

                                                                       
Query: 121 accgaaataaaaaactagaatattccttccaaagtacaggcaatgctctgaacccactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accgaaataaaaaactagaatattccttccaaagtacaggcaatgctctgaacccactgt 380

                                                                       
Query: 181 tgtgtattgatgatgagccagggtcaggaagccttccaatttgtcaagacaagcagattt 240
           ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 381 tgtatattgatgatgagccagggtcaagaagccttccaatttgtcaagaaaagcagattt 440

                                                                       
Query: 241 ttgtatgactttttcttttgcttaatactgtacaaggaccaaataaaaacatgactatga 300
           || ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ttatatgactttttcagttgcttaatactgtacaaggaccaaatagaaacatgactatga 500

                                                                       
Query: 301 cttgaattggtccttgggccagtgggtgtggcctgccatgtctagaggttcttgagaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgaattggtccttgggccagtgggtgtggcctgccatgtctagaggttcttgagaagc 560

                             
Query: 361 cacttgaagcctctttca 378
           ||||||||||||||||||
Sbjct: 561 cacttgaagcctctttca 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)