BAC Information

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BAC

Clone NameMSMg01-391L18
Chromosome11 (Build37)
Map Location 102,446,319 - 102,446,777
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792
Downstream geneFzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391L18.T7 (MSMg01no391_l18.b1)MSMg01-391L18.TJ (MSMg01no391_l18.g1)
ACCAG493437AG493438
length742785
length of high quality
(start - end)		459 (61 - 519)241 (70 - 310)
definitionCHROMAT_FILE: MSMg01no391_l18.b1 PHD_FILE: MSMg01no391_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:03 2005CHROMAT_FILE: MSMg01no391_l18.g1 PHD_FILE: MSMg01no391_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCGCTAAACGACTACTATATTCAACAATCCGCGGAATTAACTCA
ATTACATCTGGCTGCCTCTGCAAACAGTTTTCTTTTTATTGCCCTACCAA
GGACAGCATCCTTTAAACCAGATACATCAGGACTTCACCAAATACAGCCA
ATGTAAAATGGCAGTTCGTGCTCCTATTCCTGAAACCCAAAATCTAACAG
AGAGTGGAGACCAGTCCCAGGCCTCACACTAATAAATAAAGGTGAAATTC
CACTTCACCCCTCCAGCCCCAACTTACACGCTCTCCTAGCCCAGACCCCA
AAGGACCCCATAATGGTTGATTGCACTAGACTTACAGGATGCTCCTTTCT
GTAAACCCTTACACCCTGAGTCCCAGTACCTGTCTGTCATTGAGGACCCA
AACTCCCATGTTACCCAGCTCACCTGGTTGATCCTACCCCTGGGACACAA
GGACAGTCCCCACCTCTTTAGCCAGGCCTTCTCTAGGAACCCCCTTGACT
TCTTGAACCCTCAAGCCAGGGTCCGCCAATATGTGAATGATCCTTTGTAG
CCCACAGAAAGTCCCCCAGNAAGGAACTGAGTTTACTCCTTATCTGANCA
GGGGCTATAAGGTTTCTAAAATAAAGTTCGGTTGTGCCCCCCTGTCAACC
AAATACTTATTAACAAGCCCCAACCCAACGAGAAAGGGAACTTTGCCAGG
ACTCGGGGAAAAACAAACCTTTTCCTTCCACCTACAAAAAAA

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTAGACCCCATAAAA
ACCCCTAGCTTTCGAGCCTCGCGGCCGACATCCATTATCTCCTGTGTGGG
ATGCATGTCAGTTCGGAGCTCCGTAATTAAACGACCTCATGTAATTACAT
CAAGATGGTCCTTTGTGATTTTTTGGGTGTACACTGAATCGGGAATTGAG
TGGGGGTTTCCCCACTAGGTTCTATCAGAGCAAAGCGAGTTGGGGAGGGA
TAAGTCAGCCTACTTTTTCACATCACTGTTCATCACCAAAGGAAGTCAGG
ACAGGAACTCACACAGGGCAGGGACTTGGAGTCAGGAGCTGATGCAGAGG
CCATGGAGGGATGCTGCTTACTGGCTTCCTCATCCTGGCTTGCTCATCCT
GATGTTTTATAGAACCCAGGACCACCAGTGTAGAGAGAGCACCACTCACA
ATGAGATGGGCCCTCCCCCATCAATCACTAATTAACAAGATGCCCTTGGT
GGTGGTAGGTGGCAGCTGTAGTTGCGTTCAAGTTTATTCTCATCTCTAGC
CTGACATATGTTGATGCAGTCGGACCTTTGCGACCTCGCATGTATTTTGT
TTCTCCCTGCCAGGCCCCAGAATACCTTCACCTTTTTCTAACCCCCTGGT
GCAGTGCCTTTTCTATCTAATTCTTCCTATAGAGCGTTACACTTTTTTTC
CCGTTGTCTTCCCTACGNCCCCCTCTCCCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_l18.b1 MSMg01no391_l18.b1 CHROMAT_FILE:
MSMg01no391_l18.b1 PHD_FILE: MSMg01no391_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:03 2005
         (459 letters)



>mm_chr11_102446119_102446977
          Length = 859

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgcctctgcaaacagttttctttttattgccctaccaaggacagcatcctttaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gctgcctctgcaaacagttttctttttattgccctaccaaggacagcatcctttaaacca 600

                                                                       
Query: 61  gatacatcaggacttcaccaaatacagccaatgtaaaatggcagttcgtgctcctattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gatacatcaggacttcaccaaatacagccaatgtaaaatggcagttcgtgctcctattcc 540

                                                                       
Query: 121 tgaaacccaaaatctaacagagagtggagaccagtcccaggcctcacactaataaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgaaacccaaaatctaacagagagtggagaccagtcccaggcctcacactaataaataaa 480

                                                                       
Query: 181 ggtgaaattccacttcacccctccagccccaacttacacgctctcctagcccagacccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggtgaaattccacttcacccctccagccccaacttacacgctctcctagcccagacccca 420

                                                                       
Query: 241 aaggaccccataatggttgattgcactagacttacaggatgctcctttctgtaaaccctt 300
           |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 419 aaggaccccagaatggttgattgcactagacttacaagatgctcctttctgtaaaccctt 360

                                                                       
Query: 301 acaccctgagtcccagtacctgtctgtcattgaggacccaaactcccatgttacccagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acaccctgagtcccagtacctgtctgtcattgaggacccaaactcccatgttacccagct 300

                                                                       
Query: 361 cacctggttgatcctacccctgggacacaaggacagtccccacctctttagccaggcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cacctggttgatcctacccctgggacacaaggacagtccccacctctttagccaggcctt 240

                                                  
Query: 421 ctctaggaacccccttgacttcttgaaccctcaagccag 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctctaggaacccccttgacttcttgaaccctcaagccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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