Query= MSMg01no391_p04.b1 MSMg01no391_p04.b1 CHROMAT_FILE:
MSMg01no391_p04.b1 PHD_FILE: MSMg01no391_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:19 2005
(187 letters)
>mm_chr11_116969357_116969943
Length = 587
Score = 323 bits (167), Expect = 4e-93
Identities = 179/183 (97%)
Strand = Plus / Minus
Query: 1 ctgatctgtccctttattcagccctttgttaattcaaccaacctagataccgtagcttaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 ctgatctgtccctttattcagccctttgttaattcaaccaacctagatactgtagcttaa 324
Query: 61 ctcgttcagacagcaggctaaacaccggaggaaagaaacccgtgaggcatgcctagcccg 120
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 323 ctcgttcagacagcaggctaaacaccggaggaaagaaacccgttatgcatgcctagcccg 264
Query: 121 gcacaacagtgcgtacctgtggtccctgtgctccggagccagagatggaaagatcatgca 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcacaacagtgcgtacctgtggcccctgtgctccggagccagagatggaaagatcatgca 204
Query: 181 aga 183
|||
Sbjct: 203 aga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no391_p04.g1 MSMg01no391_p04.g1 CHROMAT_FILE:
MSMg01no391_p04.g1 PHD_FILE: MSMg01no391_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:19 2005
(242 letters)
>mm_chr11_116845372_116846008
Length = 637
Score = 418 bits (216), Expect = e-121
Identities = 234/242 (96%), Gaps = 5/242 (2%)
Strand = Plus / Plus
Query: 1 aggaccctggggacaactgcggtgactgttagaagctgtgtgtctttgaaccttggccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aggaccctggggacaactgcggtgactgttagaagctgtgtgtctttgaactttggccag 260
Query: 61 ccacaggcgtgagcattaattaggacctggagactggttctgaactgctcttctatggat 120
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ccacaggcgtgagcatta----ggacctggagactggttctgaactgctcctctatggat 316
Query: 121 ggggatctgaagcccagaaagacacattggggggggtcaaggccagagtcactaaactag 180
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 317 gaggatctgaagcccagaaagacacattggggggg-tcaaggccagagtcactaaactag 375
Query: 181 ggctccccactcccatctcactacatcctcaaagctcacagaaacattacctgctaggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggctccccactcccatctcactacatcctcaaagctcacagaaacattacctgctaggac 435
Query: 241 ct 242
||
Sbjct: 436 ct 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 637
Length adjustment: 9
Effective length of query: 233
Effective length of database: 628
Effective search space: 146324
Effective search space used: 146324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
