BAC Information

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BAC

Clone NameMSMg01-392E12
Chromosome11 (Build37)
Map Location 64,551,227 - 64,551,473
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
Downstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E12.T7 (MSMg01no392_e12.b1)MSMg01-392E12.TJ (MSMg01no392_e12.g1)
ACCAG493852AG493853
length760779
length of high quality
(start - end)
435 (75 - 509)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no392_e12.b1 PHD_FILE: MSMg01no392_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:45 2005CHROMAT_FILE: MSMg01no392_e12.g1 PHD_FILE: MSMg01no392_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACAGATTCCGTGAAATACCTACAAAAATCCTATTGGCT
TTTTTTCCTCCCAAAATGTAAAACAAAACAATGCTAAGTTCTTACGGGCT
TTCAGGGATTCTGAAAAGCCAACACAGTCCTGGAGAAAAATCAAATGAGA
AGACTCATGTTTACTTATTTAGAATCTTACTCAAAGCTACAGGGATTGAA
ACAACATGGAGTGAGTCTAAAGCTCACACCCAGAGGGAAGGGCTGTGGGT
GGAGTGCGGGGGTGGAGTCCCTGTTTTTGGTTTTCAGAAGTAGAGTGGAG
TTCACAGTGAGGAAGAGTAGTCTACTCAACACACAGTGTGGACCCATTAC
ATAACCACAAGGATAATGGAGCTGGAGCCCAGCCTCACATGGTAGACAAA
GGCCTTTGACAGAGGCTCACAGCTCCAGATGTAAGAGCTGAAATCACAAA
ACCATAGGGGTAAAAAATACCAAACCAAAACCAAAACAAACCACAGTCTA
AATCATTACAGCCTCGGACTTAGTAACTTATAAGTAGCTGCCAACCCTGC
AGTAACATAACAAAACCACGCGAGAAGTCATTTATCCCCAATTTACCAGA
CTTTGCGCTTCCCCACCGCATTAACGGAACTAATCCCCATTCCCCCCTCA
CGCAAGAATCCAACAACCCCCCGCCCTCCTAATTCCTGGACACCCCCCTC
CACACCCCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAATTTCAAAGGGTGGTAATTAAT
TGAATGCAACAAGACAACAAACAGTGACCTTTTCCTCAGCGTGCAACCTT
TGCATCTGCTTTTGGGTAGAATCAGGGGCCAGGCTGACATGGTCTCAGTG
TGGATGGCAGGGAACCCCTTTCAGCGATATATCAGCCCATTACCAGCCTT
GGTATACATTCTTTGGCTGTCTCAGGATGAATCCGCCCAGCTCTTGGCAG
AAGAGAAAAGACTTCCCAAATCATTTCTCAACTGATCGGTCAAAGTGAGT
TAAATTATTCCAGGTGTGCTACGCAGGGGGTTATTATGACCATAGGGAAA
TGGTAACAGGAGGCCCACCCCATTGCTTAGAGAGCTGATGAATTGGTTTC
TCTCTCCTGTCTCCCTGCACCCCTTCAAAAGCCGTACTGCCTCTCCCCCC
GTGTTCAACGCGTGGACTTTTTCCCCATTGTAACCTCCTCGGTCTCCCAA
ACACTCACCACTTCTTTTTCCCCTTTCCCTTCCCCCTCTTCTATTACCAC
CCCTTCCCCCCCCCGCCCATTTCCACTTCTCTTGTTCCTTTCCTCTTTCG
TTCCCCCCCTTTCTTTTTCTCTTTCCCCCCCCCCCTCCTTCCCCTCTTTC
CCTCCCTCCACCCACCCCCTTCCTCCCTTACCTTTCTTCTCCTCCATCCT
GCTTTTCTCCCCTTCCCTCCTTCCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e12.g1 MSMg01no392_e12.g1 CHROMAT_FILE:
MSMg01no392_e12.g1 PHD_FILE: MSMg01no392_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:45 2005
         (247 letters)



>mm_chr11_64551027_64551673
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaatttcaaagggtggtaattaattgaatgcaacaagacaacaaacagtgaccttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgaatttcaaagggtggtaattaattgaatgcaacaagacaacaaacagtgaccttttc 388

                                                                       
Query: 61  ctcagcgtgcaacctttgcatctgcttttgggtagaatcaggggccaggctgacatggtc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcagcttgcaacctttgcatctgcttttgggtagaatcaggggccaggctgacatggtc 328

                                                                       
Query: 121 tcagtgtggatggcagggaacccctttcagcgatatatcagcccattaccagccttggta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 327 tcagtgtggatggcagggaacccctttcagcgatatatcagcccattaccagccttggca 268

                                                                       
Query: 181 tacattctttggctgtctcaggatgaatccgcccagctcttggcagaagagaaaagactt 240
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 gacattctttggctgtctcaggatgaatccgcccagctcttggcagaggagaaaagactt 208

                  
Query: 241 cccaaat 247
           |||||||
Sbjct: 207 cccaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)