BAC Information

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BAC

Clone NameMSMg01-392E15
Chromosome11 (Build37)
Map Location 108,754,868 - 108,755,255
singlet/doubletsinglet
Overlap genenone
Upstream geneCacng5, Prkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945
Downstream geneAxin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E15.T7 (MSMg01no392_e15.b1)MSMg01-392E15.TJ (MSMg01no392_e15.g1)
ACCAG493858AG493859
length781827
length of high quality
(start - end)
389 (72 - 460)206 (73 - 278)
definitionCHROMAT_FILE: MSMg01no392_e15.b1 PHD_FILE: MSMg01no392_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:46 2005CHROMAT_FILE: MSMg01no392_e15.g1 PHD_FILE: MSMg01no392_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGATCTATGAAGAGGCACGCCAAGTGGGGAAGCACCTCTTC
CTTTTTCCGTGGGTGGCGGAGGGCCTCAGTCTTCTTGAAAACCCACGTCA
CGTCTGCCCTGAACCTATCTGGGGACAGAGGTGGGAAGCGGACTTTAATG
CTCAGGGACTTCCCTTCTCCTGAACATCTGAGATGTCCCTGGTTCCCTTC
ATAGCATAGAGCAGCAGGCCTGGTGACCAGGCCAACATCTTTATCTCTGG
GATGAGAAGATAGCCAGCAGGTCTAAATCTTTATCTTATGAATGAGAAGC
TAGTGTTTCAAACAGGTGAGAGGACTTTGCCTGGAGTGCCAAAATCATCA
GCAAATTGGTTGCAATACTAGTTCCACTCTCACAAGCAGATAAGGTGGGG
TGGGGGTAGCGGGCGGGCGGAGGTGCGAGAATTGAACTAGAGAACTGCCC
CAGGGATACACCACCTTGTTGAACAACAGTAACATCCTGGCCCCGTTGCC
CCTTGTTCTCCTGCCCTACACACCCGTCTGTGGTCCTTCGCACAAGGGGA
GCGAAGCCCCCCCCTCTTGCTTACCCCGGCCTCTTTTTTATCCCCCCATT
TTACCTCCCCTTTGATTTTCCGCCTTTCCTCGCTCACCCTCTATACCCCC
CCTTCTCCCGTCTCTCCCCCCTTACCTTTTTCTCTGTTTCTCCTCCTCCC
CCCCTTCCTAACCCTCTCCCTCCCTCTCCCN
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTGTCATGAA
TGGATGTTGGATTTTGTCAAGTGCTTTCTCCGCGTCTAAAGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTACATAATGGATTACGTTGATGGAT
TTCCGTATATTAAACCATCCCTGAATCCCTGGAATGAAACCTACTTGGTC
TGTATGGATGATTGTTTTGATGTGTTCTTGTATTTGGTCAGCAAGATTTT
TACTGAGCACTTTTGCTTTTTATCCACACAAGAAACCCGCCTCACGTTCT
TTACTTTTTTTTTCTCTCCCCTGTTGCCCCCCTTTTTTTCTCTTTCCTTC
CCCCGTTCCCCCCCCTATCACCCATTCTCTCTCGTTCTTCTTTTCTAGTC
CCCTTCTTCCCCGCTCCAGTCACCCCCTTCCTTCCTATTCCCTCTTCTTC
TCCTTTCCCTCTCTTCCCCTTCTTTTCGCTTTCCTTTTCCCTCCTTCCCT
CCCTTCTCTCTTCCCCTTCCTTCCTTCTTTTTCCTCCCCCCCTCTCCTTT
CTCCCCTCCCTTTCTTCTTCTTCCCCCTCTCTCGCCTTTCTCTTTTCTCC
TTCTTTTTCCTCTTTCTCCTCCCCATCTTTTCTTCTTCCCCCCTCTCTCA
CTTTCTTCCCCTTCCTTTATCCCTCTCACCCCTCTACTTTCTTCTTTTCC
CCCTCTTCCCTTCCTTCCCCCTCTATCTTTCCCCTTTCCCTTCTCCTTCC
TTCCCTTTTCTCTTTTCTTCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e15.b1 MSMg01no392_e15.b1 CHROMAT_FILE:
MSMg01no392_e15.b1 PHD_FILE: MSMg01no392_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:46 2005
         (389 letters)



>mm_chr11_108754668_108755456
          Length = 789

 Score =  727 bits (376), Expect = 0.0
 Identities = 385/388 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcacgccaagtggggaagcacctcttcctttttccgtgggtggcggagggcctcagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcacgccaagtggggaagcacctcttcctttttccgtgggtggcggagggcctcagtc 260

                                                                       
Query: 61  ttcttgaaaacccacgtcacgtctgccctgaacctatctggggacagaggtgggaagcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgaaaacccacgtcacgtctgccctgaacctatctggggacagaggtgggaagcgg 320

                                                                       
Query: 121 actttaatgctcagggacttcccttctcctgaacatctgagatgtccctggttcccttca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 actttaatgctcagggacttcccttctcctgcacatctgagatgtccctggttcccttca 380

                                                                       
Query: 181 tagcatagagcagcaggcctggtgaccaggccaacatctttatctctgggatgagaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcatagagcagcaggcctggtgaccaggccaacatctttatctctgggatgagaagat 440

                                                                       
Query: 241 agccagcaggtctaaatctttatcttatgaatgagaagctagtgtttcaaacaggtgaga 300
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccagcaggccaaaatctttatcttatgaatgagaagctagtgtttcaaacaggtgaga 500

                                                                       
Query: 301 ggactttgcctggagtgccaaaatcatcagcaaattggttgcaatactagttccactctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggactttgcctggagtgccaaaatcatcagcaaattggttgcaatactagttccactctc 560

                                       
Query: 361 acaagcagataaggtggggtgggggtag 388
           ||||||||||||||||||||||||||||
Sbjct: 561 acaagcagataaggtggggtgggggtag 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)