BAC Information

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BAC

Clone NameMSMg01-392E22
Chromosome11 (Build37)
Map Location 7,432,802 - 7,433,245
singlet/doubletsinglet
Overlap genenone
Upstream geneCcm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E22.T7 (MSMg01no392_e22.b1)MSMg01-392E22.TJ (MSMg01no392_e22.g1)
ACCAG493872AG493873
length789795
length of high quality
(start - end)
460 (49 - 508)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no392_e22.b1 PHD_FILE: MSMg01no392_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:47 2005CHROMAT_FILE: MSMg01no392_e22.g1 PHD_FILE: MSMg01no392_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCTTACAGAGAGCAAGCTATGCTTTCTGCTTCTAGGATTGT
ACATTTTTGCTATGAAGGAATGTTTCTATCTCTCATTAGGGACTTATACT
TTGCAGTCTGTGTGATCTATATCTAGAGAAACAGGAGGAAGAATGAAAAT
CAGTATGACCAAGATACAACGTAAATATGAAAATTTCAAAGAAATAAAAT
ATTGTTAAAAAAAACAGGCTCACAGATGGTATTCTCTGCATTACAGATCC
AACTTGCAGTTATTGGCTCTTAAGAGTAAGAACAAGAACCTTATTGTCAG
CCTTATTGATTATTGTTGTTGTTGCTTATTTACAGCTATTGTTATTTGAG
TCCTGAGACGTTTGAGTTGGCATTTGGGATGGGACTTGAACACTGAAAAC
TTTTATGGTGACTATATCAAGGATGTATTTTATATCAGATCTGTAAGACA
CACACACTCACACACACACACACACTCACACTCTCTCATACACTTAGAGT
GAGAGAGAGAGAGAAACCTGAAAGTTGAGGCCATAACTTAGGGATGGGAT
GTCTCCTGTTCCCAAACGGGTCCCCTGGTTTACCCCCCCGCAAGAAGGGG
CGTACCCCCCCTTCTTAATCCCCTCTCCCCCCCCCGCCGCGGTATTTATC
CCTCCCGGTCAAAACACACCACTGGAGAAAAAATTTTCTTTCCCTCTCCC
CCTCCCGGGTGTTCAAACATCCCCTGGTGCCGCGCTTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCCATTACGCAATTGGTTTATGA
GAGTGCTAACGCAGCGTGCTGTGCCGCTATTCGGCTGCACAAAGGACAGA
CAGACTTAGTGGCATATATACATCTTTGTGCAGAGACTGGGCCATCATAT
AATCAGGGTTTGGCCTTGGCCACTGCTTTGCAAGAAACCACTGTTCAAGC
AATGCTTGCACAGAAACGAGGGAAAATGCATGTTTTAAGTGTGGAAGTTT
GGGCCATTTTAAAAATGATTGTTCTATGAATAGAGGTGCTGAGAGTGGGC
AAGCAAGCCGTGCTCCAGAAGTTTGCCCTCGATGCAGGAAGGGCAACCAT
TGGGCTAGGGAATGCACATTCAAGACAGACATTCAGGTCTGTCCCTTGTC
TGGCCTTGAGAATAGCAGCTTGTCCCCGACCCTGAGAAACCCTCAGCCTG
CAGCTCACGCCGGCTATGATACTGCTTGCCTTTCCAAAGATATCTTGCTT
TTCGACCCTCCCAGTGCACCCTCACTACTCCCCCCAATTGTTACTTTTCG
TCCATCTTCCCTTTCTTCCTCTACTCTTCCCAAGCGCTCCTCTTTTTTTG
GCCTCTCCTAATATTATTGTCCTCTTTACTCCCCCTCTCCCATCTCTTTA
CCCCCCTCCCTTACCCTTTTATACCCTCTCGTTCCCCGTTTTTCCCCACC
CATCTCTTCCCCCCTATTCTCCCCCCCCTTTATCCCCCAATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e22.b1 MSMg01no392_e22.b1 CHROMAT_FILE:
MSMg01no392_e22.b1 PHD_FILE: MSMg01no392_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:47 2005
         (460 letters)



>mm_chr11_7432587_7433446
          Length = 860

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Plus

                                                                       
Query: 16  acagagagcaagctatgctttctgcttctaggattgtacatttttgctatgaaggaatgt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 acagagagcaagctatgctttctgcttctaggattgtacatttttgctatgaaggaatgt 275

                                                                       
Query: 76  ttctatctctcattagggacttatactttgcagtctgtgtgatctatatctagagaaaca 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttctatctctcattagggacttatactttgcagtctgtgtgatctatatctagagaaaca 335

                                                                       
Query: 136 ggaggaagaatgaaaatcagtatgaccaagatacaacgtaaatatgaaaatttcaaagaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggaggaagaatgaaaatcagtatgaccaagatacaacgtaaatatgaaaatttcaaagaa 395

                                                                       
Query: 196 ataaaatattgttaaaaaaaacaggctcacagatggtattctctgcattacagatccaac 255
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ataaaatattgtttaaaaaaacaggctcacagatggtattctctgcattacagatccaac 455

                                                                       
Query: 256 ttgcagttattggctcttaagagtaagaacaagaaccttattgtcagccttattgattat 315
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 456 ttgcagttattggctcagaagagtaagaacaagaaccttattgtcagccttatttattat 515

                                                                       
Query: 316 tgttgttgttgcttatttacagctattgttatttgagtcctgagacgtttgagttggcat 375
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 516 tgttgttgttgcttatttacagctattgttatttgagtcctgagacttttgagttggcat 575

                                                                       
Query: 376 ttgggatgggacttgaacactgaaaacttttatggtgactatatcaaggatgtattttat 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttgggatgggacttgaacactgaaaacttttatggtgactatatcaaggatgtattttat 635

                                   
Query: 436 atcagatctgtaagacacacacac 459
           ||||||||||||||||||||||||
Sbjct: 636 atcagatctgtaagacacacacac 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)