BAC Information

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BAC

Clone NameMSMg01-392F03
Chromosome11 (Build37)
Map Location 60,070,556 - 60,070,656
singlet/doubletsinglet
Overlap geneTom1l2
Upstream geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1
Downstream geneLOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392F03.T7 (MSMg01no392_f03.b1)MSMg01-392F03.TJ (MSMg01no392_f03.g1)
ACCAG493882AG493883
length770805
length of high quality
(start - end)
254 (69 - 322)101 (100 - 200)
definitionCHROMAT_FILE: MSMg01no392_f03.b1 PHD_FILE: MSMg01no392_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:48 2005CHROMAT_FILE: MSMg01no392_f03.g1 PHD_FILE: MSMg01no392_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACTGATATAGAAATCTTCAGTACAGGCTACATTGCATATTA
GAAGCAAGTTGGTGAATTCTTCTGACAAATGGAGATTCTCCAGTTACTTA
AAAGTTACACTCATGTGGGGGTTTGGCAAGGCCTAGGAAATGGGGAGGGG
AGGGGTTTGTGATGTTGCATTATTCATGAGGCCTGCTAAGAGCAGAACCC
CCTGGTGCTAGCTTTCACAAGGTTCAAAGGTATAGCACTAGAGTGTGAAA
TCTTTACCTGTCACTAAGCTGATTTTATGCAGGACTGCTTTATCTTTACT
GTAAACATCTACCTGGTTTCTGTAAATCCCTTTGTTGTCATTCCTTTGTT
TTGTATCAAGTAACTTCACCGTACTTTGCCTGCTACCCTTTTTATTTTCT
GTACTATATAAGATTGGTGTTCACTTTGTGACCTTACATTCAGACTCTCA
CCAATCTCCAATGTTGGTCTGTCTTGCACCCGCTGATGCCTTGTCCCTCT
GCCCCCCAGACTCCTTCCCCCCCCACAACGCCACTCCCCACCCCTGCCCC
CTAACCACTTACCGTCCACCCTCCCTGGCCCCCTCATTATCCCCCCCCAG
ACCCCCCCCCTTTGTATCCCCCCCCTCCCCTCTCCTCTTCCTCCTCTTCC
TCGTTCCGGGCCGAAACCACCCCCCCCTTCCTCTGACCCCTCTTACCCGC
GATATCCCCCCCCTTCCCCC
CTGCTTTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAACACTGATACAACATAGTCACCATATCA
TACTAGACTGGCCTCAGAGTCCTGTGTGCCCTAGGATGCCTAGCCGAGCC
CTCCTGCTGGCTACGTTAGGGGCCAATGATGGTGCATTCAAGGTAGGTGG
GTCCACAGAGTACGTAACACACGATCACCACCTGAAGAATCAGGACCTTG
GTTTGCTGCAGGTGTCAGGAGTGAAGTCTGGGAACCAGAGATACTCAGTG
CTCCTACTGACTTAGGCCTTTTTTACTCATCTCAGGTTCAGGATTACTCT
GATGTTCCCGCCTCTTGCCACCATTAGCTTCCTTGTTTGTCTCCTGCACC
TATCTGTTATTTCCCTACACCAGACTCTTTATCTCCTACTGCACTTTACT
CTTTCCTCCCTCCTCAGTGTTCGACTTTTCCCAATTTCCTCTCCCCTGCC
TTTTTCCCTTTCCCCTCCTCACCTTGTTCCTTTTTTTCTCCCTTTTCCTT
CCTTCCCCTTTCCCTCGTTCTCCTTTTTTTTCTTCTCCCCCTTCTATTTT
CTTTTCCCTTCTTTTTCTTTTTTTCCCTCTTACTTCCCTTTCTTTCCTCT
TTTTTTTTTTCCCTCACCTCCCCTCGTTTCTCCTTCTTTCTTTCCTCCCC
TTATTTTTCTACTCTCCCCCCCCCCTCTTTTTTCTTTTCTCTCCCACTTT
CTCCTTTTCCCCCCCCTCTTCCTCCTCTTTCTTCCTCCTTTTTTTTTTCC
CCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_f03.g1 MSMg01no392_f03.g1 CHROMAT_FILE:
MSMg01no392_f03.g1 PHD_FILE: MSMg01no392_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:48 2005
         (101 letters)



>mm_chr11_60070356_60070856
          Length = 501

 Score =  180 bits (93), Expect = 2e-50
 Identities = 99/101 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactagactggcctcagagtcctgtgtgccctaggatgcctagccgagccctcctgctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 atactagactggcctcagagtcctgtgtgccctaggatgcctagccgagccctcctgcag 260

                                                    
Query: 61  gctacgttaggggccaatgatggtgcattcaaggtaggtgg 101
           ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gctacgttaggggccaatgatggtgtattcaaggtaggtgg 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 501
Length adjustment: 8
Effective length of query: 93
Effective length of database: 493
Effective search space:    45849
Effective search space used:    45849
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)