BAC Information

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BAC

Clone NameMSMg01-392N18
Chromosome11 (Build37)
Map Location 62,863,939 - 63,002,853
singlet/doubletdoublet
Overlap geneTekt3, Pmp22
Upstream geneSpecc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4
Downstream geneLOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392N18.T7 (MSMg01no392_n18.b1)MSMg01-392N18.TJ (MSMg01no392_n18.g1)
ACCAG494295AG494296
length770774
length of high quality
(start - end)
469 (69 - 537)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no392_n18.b1 PHD_FILE: MSMg01no392_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:32 2005CHROMAT_FILE: MSMg01no392_n18.g1 PHD_FILE: MSMg01no392_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,863,939 - 62,864,407)(63,002,609 - 63,002,853)
sequence
NATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAGATTATCGATGGTGACATGGCTGCTAGAGGCTAGGGGCTCC
TTACCTGTGGCCATGCACTTCTCTGTGCATACACCCATCCAGTGTTGTCT
GACTAGAGCCACCACAGTACAATGTGGGTGTTTGCAGGCCCGGTGCCCTC
CAGGGGAAGAACAACAGACCAGCTCTCAGAATTCTCAGCAAGGACCTGCA
CACTGTTCTCAGTGCACACGTGACTTCAGAGGGCAGGTGGAAGCAGCAGT
GTGTTTGTGGACAGCTATGTTTAAAGCCTTTCATTTCTGAGAGCTGAGAG
CTGACAAAAGAGAGCCCGCACAGCATGGTATTGCTCATGGTCCTTGCTAC
GTTTATCTGCATGGCGATCCAAAGGTTGTTCTGCATGAGATAAGAAATAA
TATAGTAAGCATTTTGTAACTTTCCCTTTGTACTCAGAAAAGTAACTTGT
AGGAGAGAGAGTAATATATTATATATGTGATATATGGCATATATTACCCC
ACCCCCCCTCTTCCCCCTTTCCCCCTTTCCCCTTCCTCCTCCTTTCCCCC
CCCCCCCCTCCTCTACCTTCCCATCCCCCCTCCTCCCTCCTTCCCTCCCC
CCTTTTTTTCCTTTCCCTCTCCTCCTCCACCTTCTCTCCCCCCTTTTCCT
CCCCTCCTTCCTCTTTCTCTCTTCCCTCCCCCTCACCCTCCCCTTTTTTT
TTCCATTCCCCCCTCCTCCC
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGACGTTGTACACCAGAGAG
ACAAGTCAGACAGTCTTTCTCTAAGTAATTTCTCTAATGGCTTTTTTAGC
CTAAAATCTTCAATATGCCAATTTGTCATATCCAGAGATGGCCTGTCCTT
CCTATTTCTAGAGGGGTGCACACAGAGAAAAGACCACACAGTGTGATGGG
CAGAGTCTGTTTCTGGCATGTGCTACCTGGGCTCACCGAGGAGCTGAGCT
AAGTGGGTTGCTGCTGCCCTCCCTTTTTTTCACTTTAAACCAAAGCATGC
CTATGCCAAACGTCCTTCAAGGCGCTTTGTCTGGGGGTGGTCTGGCTCCT
CTAACTCTGTGACAGGGAGCACACAGAACAGTCCAAGAGTGAACACATCA
CATCCTTATAAACAGCTGGAGGGTAGATCATTTCCAACAAACGTCATTTG
TTTACTCCCTGACAGAAAAGCGTTTACAGTGCGAGAGAGAACCAGGTACC
CCCGGCCTGCCAGCCCCTCCCTGGAAAAAAATATTCATTCTCCCCTCCCA
GCTGGTACGCCCTAACTTCCTTGTCCACTTTCTCCGCGCTTTTTTGAACT
TCCCCCAATCACCTCCCTTCTCTTCCTTATACTCCCTACCCTTTTATCTT
GTTCCCCTCTTCTCTCCTTCCACCTCATTTTTTCCTTGCCCCCTCCTCCC
TTTCCTTTCTCATTAATCCCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_n18.b1 MSMg01no392_n18.b1 CHROMAT_FILE:
MSMg01no392_n18.b1 PHD_FILE: MSMg01no392_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:32 2005
         (469 letters)



>mm_chr11_62863739_62864607
          Length = 869

 Score =  853 bits (441), Expect = 0.0
 Identities = 462/469 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgacatggctgctagaggctaggggctccttacctgtggccatgcacttctctgtgc 60
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 201 tggtgacatggctgctagtggctaggggctccttacctgtggccgtgcacttccctgtgc 260

                                                                       
Query: 61  atacacccatccagtgttgtctgactagagccaccacagtacaatgtgggtgtttgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacacccatccagtgttgtctgactagagccaccacagtacaatgtgggtgtttgcagg 320

                                                                       
Query: 121 cccggtgccctccaggggaagaacaacagaccagctctcagaattctcagcaaggacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccggtgccctccaggggaagaacaacagaccagctctcagaattctcagcaaggacctg 380

                                                                       
Query: 181 cacactgttctcagtgcacacgtgacttcagagggcaggtggaagcagcagtgtgtttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacactgttctcagtgcacacgtgacttcagagggcaggtggaagcagcagtgtgtttgt 440

                                                                       
Query: 241 ggacagctatgtttaaagcctttcatttctgagagctgagagctgacaaaagagagcccg 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggacagctatgggtaaagcctttcatttctgagagctgagagctgacaaaagagagcccg 500

                                                                       
Query: 301 cacagcatggtattgctcatggtccttgctacgtttatctgcatggcgatccaaaggttg 360
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 cacggcatggtattgctcatggtccttgctacgtttatctgcatggtgatccaaaggttg 560

                                                                       
Query: 361 ttctgcatgagataagaaataatatagtaagcattttgtaactttccctttgtactcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgcatgagataagaaataatatagtaagcattttgtaactttccctttgtactcaga 620

                                                            
Query: 421 aaagtaacttgtaggagagagagtaatatattatatatgtgatatatgg 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtaacttgtaggagagagagtaatatattatatatgtgatatatgg 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no392_n18.g1 MSMg01no392_n18.g1 CHROMAT_FILE:
MSMg01no392_n18.g1 PHD_FILE: MSMg01no392_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:32 2005
         (245 letters)



>mm_chr11_63002409_63003053
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagacgttgtacaccagagagacaagtcagacagtctttctctaagtaatttctctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatagacgttgtacaccagagagacaagtcagacagtctttctctaagtaatttctctaa 386

                                                                       
Query: 61  tggcttttttagcctaaaatcttcaatatgccaatttgtcatatccagagatggcctgtc 120
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 tggtttttttagcctaaaatcttcaatatgccaatctgtcatatccagagatggcctgtc 326

                                                                       
Query: 121 cttcctatttctagaggggtgcacacagagaaaagaccacacagtgtgatgggcagagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcctatttctagaggggtgcacacagagaaaagaccacacagtgtgatgggcagagtc 266

                                                                       
Query: 181 tgtttctggcatgtgctacctgggctcaccgaggagctgagctaagtgggttgctgctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttctggcatgtgctacctgggctcaccgaggagctgagctaagtgggttgctgctgc 206

                
Query: 241 cctcc 245
           |||||
Sbjct: 205 cctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)