XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGT
TATGTTTTACGCTGGGTTCTTTATTTTTATTTTTTATTTATTTTTTTGGT
TTAAGATATCACTGCAATTTTTTAATGAAAAATAATTTCTCTACACTCCT
ACTTTCTACATCAAACTCAGAATGAACCATGTAAAATTATCTTAGAGACA
GATTTGATCATTTCTTTGGAAGAGATTAATTTTAAAGATGTATTTATATA
AATCTAAGTTCATTTTTCTGGTTATTCTATATATATAATGTATGAGAAAA
TGTAGGAAGCTTGACAGTACCCTGTTTGCATCAGTCACTTGAAAAAGGCT
GACTTGTGTCTTTTTCTGAGGGAAGCAGATGCTAAATGAATGTTCCTATG
TTTTTATGTCCTTTAACTCAGACACAGTATTAATGTCAAACTTGGGCAGT
CCAGTACTATATCCTGTATTCTGTATGTGATTCACTGCTCTGGATATAAT
ACACAGCAAATGTGTCAGAATAATGTCATGTAGCTATGACTCTCTTAATT
TAAAGTTAGTATTGTTAATATTTAACCTCTATAAAGATAACTTCTATCTT
CAGTTGACCAATATATTATATTTACCTCTTCTTGATAAATGCCTATTAAT
TTAAAAAATAGGTATACCCAACCTGATACAAAAATTTTTTAATCCCATAA
TTCAAATTCCCTGGTGGTTTTTAAATCAATGGATTTGGTAATGGCTTTAA
CTCCTTTTATTCTGTCTATTAAG

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTG
TTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGT
TTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCAT
ATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATG
GATGATTGCTTTAATGTGTTCTTGCATTCGGTTAGCGAGAATTTTATTGA
GGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATC
TTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATA
AAATGAGCTTGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTGTGT
GCAGAACTGGAATTACATCTTCTTTGAAGGTCTGATAGAACTCTGCACTA
AACCCGACTGGTCCTATGGCTTTTTTGGCTGCGAAACTATTAATAACTGT
TTTCATTTCCTTAAGGGAATGGTGACTGTTTACAATGTTCCCCTTTATCC
CGCATCCTCTTATGGTACCTCGATTTCCCGCCCCTAAACTTTTCCCCCCT
TCATTTCCTGTTTTCCCTTTTTTTTCATAACTTCCCTCCTTGATCCATTT
TCTTTATTTTCCTTTAAAACCTCTTTCCTCATTCTTCTTCATTACATCCT
TTTTTTCTCCTATTATACCTTTCCCTTTTTTTTTA

Query= MSMg01no393_o18.b1 MSMg01no393_o18.b1 CHROMAT_FILE:
MSMg01no393_o18.b1 PHD_FILE: MSMg01no393_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:06 2005
         (486 letters)



>mm_chr11_28582044_28582930
          Length = 887

 Score =  851 bits (440), Expect = 0.0
 Identities = 473/484 (97%), Gaps = 3/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagttatgttttacgctgggttctttatttttattttttatttatttttttggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagttatgttttacgctgggttctttatttttattttttatttatttttttggt 264

                                                                       
Query: 65  ttaagatatcactgcaattttttaatgaaaaataatttctctaca-ctcctactttctac 123
           |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 265 ttaagataacactgcaattttttaatgaaaaataatttctcta-agctcctactttctac 323

                                                                       
Query: 124 atcaaactcagaatgaaccatgtaaaattatcttagagacagatttgatcatttctttgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcaaactcagaatgaaccatgtaaaattatcttagagacagatttgatcatttctttgg 383

                                                                       
Query: 184 aagagattaattttaaagatgtatttatataaatctaagttcattttt-ctggttattct 242
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 384 aagagattaattttaaagatgtatttgtataaatctaagttcattttttctggttattct 443

                                                                       
Query: 243 atatatataatgtatgagaaaatgtaggaagcttgacagtaccctgtttgcatcagtcac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 444 atatatataatgtatgagaaaatgtaggaagcttgacagtaccctgtttgcatcagtcag 503

                                                                       
Query: 303 ttgaaaaaggctgacttgtgtctttttctgagggaagcagatgctaaatgaatgttccta 362
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgaaaaaggctgacttgtgtccctttctgagggaagcagatgctaaatgaatgttccta 563

                                                                       
Query: 363 tgtttttatgtcctttaactcagacacagtattaatgtcaaacttgggcagtccagtact 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 564 tgtttttatgtcctttaactcagacacagtattaatgtcaaacttgggcagtccagtaca 623

                                                                       
Query: 423 atatcctgtattctgtatgtgattcactgctctggatataatacacagcaaatgtgtcag 482
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 624 atatactgtattctgtatgtgattcactgctctgcatataatacacagcaaatgtgtcag 683

               
Query: 483 aata 486
           ||||
Sbjct: 684 aata 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space:   417452
Effective search space used:   417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)